The neuropathology of cerebral cortical damage in the perisylvian region is described, and a discussion is presented on plasticity in congenital and acquired brain lesions. Cortical malformations are diagnosed early by brain imagings and genetic examinations, and their localization and extent of influence on mild or profound neurological symptoms vary widely. Functional brain imagings and molecular neuropathology demonstrate compensatory reconstruction of cerebral functions and plasticity for brain damage. These findings should be utilized for the development of therapeutic, rehabilitational and educational treatments. In Down syndrome children and adults, neuronal plasticity and compensatory activation are found over long durations, and therefore long-term intervention is important.