The protein Zfp318 is expressed during the transition of naïve B cells from an immature to mature state. To evaluate its role in mature B cell functions, a conditional gene deficiency in Zfp318 was created and deleted in bone marrow lineages via Vav-Cre. B cell development was minimally altered in the absence of the protein although transitional 2 (T2) B cell populations were depressed in the absence of Zfp318. Intriguingly, the analysis of IgM and IgD expression by maturing and mature naïve B cells demonstrated an elevated level of IgM gene products and a virtual loss of IgD products. Transcriptome analysis of Zfp318 deficient B cells revealed that only two gene products showed altered expression in the absence of Zfp318 (Ighd and Sva) demonstrating a remarkable specificity of Zfp318 action. In the absence of Zfp318, Ighm/Ighd transcripts, which would normally encode IgM and IgD from hnRNA transcripts via alternative splicing, lack intron and exon sequences from the IgD (Ighd) encoding region. This finding indicates that Zfp318, in a novel manner, functions by repressing recognition of the transcriptional termination site at the 3′ end of the terminal IgM-encoding exon allowing for the synthesis of the complete Ighm/Ighd hnRNA.