Search citation statements
Paper Sections
Citation Types
Year Published
Publication Types
Relationship
Authors
Journals
We have analyzed the vibrational spectra of uracil and its methyl-substituted derivatives using the d) method, in the anharmonic approximation. We have shown that it is possible to use second-order anharmonic theory of vibrational spectra in predictive calculations for substituted uracils.Introduction. Substituted uracils are the primary moieties of nucleic acid pyrimidine bases (cytosine, adenine, guanine, uracil), the diversity of tautomeric forms of which in different phase states determines their multifunctional biochemical properties. The use of vibrational spectroscopy methods for constructing structural dynamic models of the indicated compounds of course begins with theoretical analysis of the vibrational spectra of specifically the primary moieties. There are two approaches. The first (conventional) approach is based on transfer of the force constants and electro-optic parameters of compounds with related electronic structures and then solution of the inverse vibrational problems [1]. The disadvantages of such an approach have been considered in detail in [2], while the possibilities for eliminating such disadvantages based on direct quantum calculations of the adiabatic potential parameters have been described in [3]. This is especially so for cyclic compounds, for which doubts have been expressed by the authors of the scheme themselves [4] concerning the applicability of the scheme for transfer of the spectroscopic parameters, since the transferred parameters are connected with additional relations. The indicated conventional approach is limited by the framework of the harmonic approximation in the theory of the vibrational spectra of polyatomic molecules. In this approximation, anharmonic effects are taken into account by introducing spectroscopic masses of the atoms and valence bond lengths [1], and the determined harmonic force constants are effective constants. Such a situation also occurs for substituted uracils. The limited amount of reliable experimental data on the vibrational spectra of isotopically substituted uracils and the presence of close vibrational levels in the low-frequency range narrow the possibilities even more for application of the conventional scheme (see, for example, [5][6][7][8][9][10][11][12]).A second approach uses ab initio quantum calculations of the adiabatic potential parameters as the initial approximation for inverse spectral problems. This approach was followed by the authors of the monograph [13]. Computerized realization of such an approach, based on the use of the software Gaussian-98, made it possible to study the intramolecular dynamics of compounds in various classes [13], including uracil. However, the indicated quantum calculations were limited by the framework of the harmonic approximation. The possibility of carrying out the analysis of the vibrational spectra in the anharmonic approximation became realistic only with the appearance of the recent version of the package, Gaussian-03 [14]. There is reason to assume that the second approach in time will becom...
We have analyzed the vibrational spectra of uracil and its methyl-substituted derivatives using the d) method, in the anharmonic approximation. We have shown that it is possible to use second-order anharmonic theory of vibrational spectra in predictive calculations for substituted uracils.Introduction. Substituted uracils are the primary moieties of nucleic acid pyrimidine bases (cytosine, adenine, guanine, uracil), the diversity of tautomeric forms of which in different phase states determines their multifunctional biochemical properties. The use of vibrational spectroscopy methods for constructing structural dynamic models of the indicated compounds of course begins with theoretical analysis of the vibrational spectra of specifically the primary moieties. There are two approaches. The first (conventional) approach is based on transfer of the force constants and electro-optic parameters of compounds with related electronic structures and then solution of the inverse vibrational problems [1]. The disadvantages of such an approach have been considered in detail in [2], while the possibilities for eliminating such disadvantages based on direct quantum calculations of the adiabatic potential parameters have been described in [3]. This is especially so for cyclic compounds, for which doubts have been expressed by the authors of the scheme themselves [4] concerning the applicability of the scheme for transfer of the spectroscopic parameters, since the transferred parameters are connected with additional relations. The indicated conventional approach is limited by the framework of the harmonic approximation in the theory of the vibrational spectra of polyatomic molecules. In this approximation, anharmonic effects are taken into account by introducing spectroscopic masses of the atoms and valence bond lengths [1], and the determined harmonic force constants are effective constants. Such a situation also occurs for substituted uracils. The limited amount of reliable experimental data on the vibrational spectra of isotopically substituted uracils and the presence of close vibrational levels in the low-frequency range narrow the possibilities even more for application of the conventional scheme (see, for example, [5][6][7][8][9][10][11][12]).A second approach uses ab initio quantum calculations of the adiabatic potential parameters as the initial approximation for inverse spectral problems. This approach was followed by the authors of the monograph [13]. Computerized realization of such an approach, based on the use of the software Gaussian-98, made it possible to study the intramolecular dynamics of compounds in various classes [13], including uracil. However, the indicated quantum calculations were limited by the framework of the harmonic approximation. The possibility of carrying out the analysis of the vibrational spectra in the anharmonic approximation became realistic only with the appearance of the recent version of the package, Gaussian-03 [14]. There is reason to assume that the second approach in time will becom...
The short‐time structural dynamics of 4‐formaldehyde imidazole and imidazole in light absorbing S2(ππ*) state were studied by using resonance Raman spectroscopy and quantum mechanical calculations. The vibrational spectra and ultraviolet absorption spectra of 4‐formaldehyde imidazole were assigned. The resonance Raman spectra of imidazole and 4‐formaldehyde imidazole were obtained in methanol and acetonitrile with excitation wavelengths in resonance with the first intense absorption band to probe the short‐time structural dynamics. complete active space self‐consistent field calculations were carried out to determine the minimal singlet excitation energies and structures of S1(nπ*), S2(ππ*), and conical intersection point S1(nπ*)/S2(ππ*). The results show that the A‐band structural dynamics of imidazole is predominantly along the N1H/C4H/C5H/C2H in‐plane bending reaction coordinate, which suggests that excited state proton or hydrogen transfer reaction takes place somewhere nearby the Franck–Condon region. The significant difference in the short‐time structural dynamics between 4‐formaldehyde imidazole and imidazole is observed, and the underlying mechanism is interpreted in term of excited state charge redistribution. Copyright © 2015 John Wiley & Sons, Ltd.
Some problems on the tautomerism of nucleic acid bases have been studied by theoretical vibronic spectroscopy. Structural-dynamic models of molecules in excited states have been constructed. Based on the analysis of the change in the geometry of a pair of nucleic bases (adenine-thymine) upon electronic excitation, one possible reason for the formation of rare tautomeric forms is considered. The vibrational structure of the absorption spectra of purine and adenine tautomers has been calculated. The possibility of identifying the tautomeric forms of purine and adenine for different phase states with the aid of electronic-vibrational spectra is shown.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
hi@scite.ai
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.