Vascular endothelial growth factor (VEGF) inhibitors are the most promising antiâangiogenic agents used increasingly in the clinic. However, to be efficient, antiâVEGF agents need to be associated with classic chemotherapy. Exploring gene regulation in tumor cells during antiâangiogenesis might help to comprehend the molecular basis of response to treatment. To generate a defined antiâangiogenic condition in vivo, we transfected human glioma cells with shortâinterfering RNAs against VEGFâA and implanted them on the chick chorioâallantoic membrane. Gene regulation in avascular tumors was studied using human Affymetrixâą GeneChips. Potentially important genes were further studied in glioma patients. Despite strong VEGF inhibition, we observed recurrent formation of small, avascular tumors. CHI3L2, IL1B, PI3/elafin and CHI3L1, which encodes for YKLâ40, a putative prognosticator for various diseases, including cancer, were strongly upâregulated in avascular glioma. In glioblastoma patients, these genes showed coregulation and their expression differed significantly from lowâgrade glioma. Importantly, high levels of CHI3L1 (p = 0.036) and PI3/elafin mRNA (p = 0.0004) were significantly correlated with poor survival. Cox regression analysis further confirmed that PI3 and CHI3L1 levels are survival markers independent from patient age and sex. Elafinâpositive tumor cells were only found in glioblastoma, where they were clustered around necrotic areas. PI3/elafin is strongly induced by serum deprivation and hypoxia in U87 glioma cells in vitro. Our results indicate that antiâangiogenesis in experimental glioma drives expression of critical genes which relate to disease aggressiveness in glioblastoma patients. In particular, CHI3L1 and PI3/elafin may be useful as new prognostic markers and new therapeutic targets. © 2007 WileyâLiss, Inc.