Y chromosome genetic diversity and breed relationships in nativePolish cattle assessed by microsatellite markers

Prusak, B.; Sawicka-Zugaj, Wioletta; Korwin-Kossakowska, A.; Grzybowski, Tomasz

doi:10.3906/biy-1502-9

Cited by 4 publications

(5 citation statements)

References 23 publications

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“…The overall Y haplotype diversity (0.630 ± 0.027) observed in Indian cattle is reasonably higher than previously reported estimates in Polish cattle (0.037 ± 0.019) 17 , Lidia bovine breeds (0.42) 16 , Continental Europe (0.543 ± 0.026) and Zebu cattle (0.389 ± 0.084) 27 ; but relatively lower than Ethiopian cattle (0.751 ± 0.015) 14 , Creoles (0.779 ± 0.019), Iberian breeds (0.712 ± 0.016) and cattle of Atlantic Islands (0.677 ± 0.037) 27 . Haplotype diversity within lineages as well as retention of allelic variants by various breeds act as a genetic reservoir.…”

Section: Discussion Finding New Haplotypes In Indicine Cattlecontrasting

confidence: 58%

“…The identification of five single nucleotide polymorphisms (SNPs) has permitted the classification of worldwide extant cattle breeds into three Y-chromosome haplogroups, named Y1, Y2 and Y3 7. The Y chromosome diversity found in indicus cattle is represented by a single haplogroup (Y3) and variability within this haplogroup makes it possible to differentiate paternal lineages between Indian and Chinese cattle 8 and to recognize the presence of Y3b haplotype family of Indian origin exclusively in West African Zebu animal 9 . The Y-specific microsatellite loci have been studied in several cattle breeds from different geographical areas [10][11][12][13] or local breeds such as Ethiopian cattle 14 , Portuguese cattle 15 , Spanish cattle 16 and Polish cattle 17 . The in-depth diversity analyses based on paternal lineages have allowed the identification of several Y-haplotypes within the major haplogroups.…”

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confidence: 99%

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Y-chromosome genetic diversity of Bos indicus cattle in close proximity to the centre of domestication

Ganguly

Jeevan

Singh

et al. 2020

Sci Rep

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Y-chromosome genetic diversity in and around its domestication origin and a better understanding of indicine-specific microsatellite alleles are imperative concerns but less-targeted. We analysed Y-chromosome markers in 301 bulls representing 19 native Indian cattle (Bos indicus) and identified new alleles and haplotypes. compared to other indicine studies, the high Y-haplotype diversity found in indian cattle supports the hypothesis of greater genetic variability across the centre of origin decreasing along migratory routes with increasing distance. Hence, a considerable paternal genetic diversity of indian cattle appears to have been lost in transboundary commercial indicine breeds. the Khillar and Gir are the most diversified populations where the first tends to be the well-differentiated traditional breed carrying strikingly distinct Y-lineages with typical BM861-158 bp allele, characteristics of taurine cattle, while retaining standard indicine lineages for all other markers. Geographical distribution found to be an unreliable predictor of parental variation, and Y-lineages seemed closely related to indian breed function/utility. the comprehensive Y-chromosome information will be useful to examine the demographic expansion/spread of Bos indicus lineages from close proximity to the domestication centre across different countries worldwide and such diversity should be preserved through effective management and conservation programs.

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Section: Discussion Finding New Haplotypes In Indicine Cattlecontrasting

confidence: 58%

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confidence: 99%

Y-chromosome genetic diversity of Bos indicus cattle in close proximity to the centre of domestication

Ganguly

Jeevan

Singh

et al. 2020

Sci Rep

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“…Among bovine subpopulations, the highest FST and Nei values (FST = 0.027; Nei = 0.084) were low compared to the results obtained from different studies. In a study conducted in Poland among the Black and White, Polish Black-Backed, and Polish Red populations, FST ranged from 0.247 to 0.941 (Prusak et al, 2015). According to Zatoń-Dobrowolska et al (2007), FST values varied between 0.173 and 0.197 in Red cattle breeds; Nei values were 0.112-0.157.…”

Section: 2020)mentioning

confidence: 99%

“…Ozsensoy and Kurar (2014) examined native Turkish varieties and obtained a 2% variation between populations and 98% within a population. Meanwhile, Prusak et al (2015) showed a 26.5% variation between populations and 73.5% within the population when studying local Polish cattle breeds.…”

Section: 2020)mentioning

confidence: 99%

Genetic variability of dairy cattle breeds in Lithuania

Lapickis¹,

Griciuvienė²,

Aleksandravičienė³

et al. 2021

biologija

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Large numbers of different scientific studies are conducted to preserve the breeds and improve the existing ones by introducing the variability of the plate genes, which best shows the phenotypic characteristics that can improve the health of dairy cattle and the quality of their production. The main purpose of this study was to perform an analysis of genetic variability of Lithuanian cattle breeds. Three subpopulation groups were studied: Lithuanian Black and White (95 individuals), Lithuanian Red (49), and Lithuanian White and Red (48). Bovine genetic material was genotyped using a total of 11 fluorescent microsatellite primers to estimate genetic variability. All loci presented a high degree of polymorphism and a total of 292 different alleles (Na) were detected. Thirty-two private alleles were detected in all evaluated subpopulations. After completing pairwise population assignment, which is based on the distribution of allelic frequencies, three populations showed the tendency to group into three separate clusters. However, the performed Principal Coordinates Analysis (PCoA), which is based on genetic distances, showed no anticipated clear grouping. Bayesian structure analysis revealed three genetic clusters. Analysis of FST (0.001–0.027) and Nei genetic distance (0.029–0.084) revealed that the genetic diversity of inter subpopulation in cattle groups was estimated to be lower than the genetic diversity of intra subpopulation.

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“…Previous studies reported that the Hd value in bovine Y-chromosome was showed high in Indian Zebu cattle (0.63±0.03) [22], Ethiophian cattle (0.75±0.01) [23], Creoles (0.78±0.02), Iberian breeds (0.71±0.02) and cattle of Atlantic island (0.68±0.04) [24]. Meanwhile, low Hd value in bovine Y- chromosome was showed in Polish cattle (0.04±0.02) [25], Lidia cattle breed (0.42) [26], continental Europe cattle (0.54±0.03) and Zebu cattle (0.39±0.08) [24]. According to ZFY gene, the Pasundan cattle are closed to Taurine lineage.…”

Section: Discussionmentioning

confidence: 95%

Genetic characterization and lineage analysis of Pasundan (Rancah) cattle in West Java, Indonesia: Insights from ZFY gene sequencing

Arifin,

Bayu Putra,

Said

et al. 2023

Livest. Anim. Res.

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Objective: This study was carried out to characterize Pasundan (Rancah) cattle from West Java of Indonesia based on a partial Zinc Finger Y-linked (ZFY) gene sequence.Methods: Total of fourteen (14) DNA samples of unrelated Pasundan bulls at the breeding station (BPPIBT-SP Ciamis, West Java) were used for sequencing analysis. The blood samples were collected from jugular vein of each bull for the DNA extraction analysis. Along 979 bp of ZFY gene was amplified using primer pairs of forward: 5’- GGT GAG GGC ACA TGA GTT C -3’and reverse: 5’- CTC TGC AGG TGG TTG TGT AA -3’. Therefore, a forward sequencing method was performed in the present study to obtain the ZFY gene sequences. Along 714 bp of bovine ZFY gene sequences were used for determining the Neighbor-Joining (NJ) tree for Pasundan bulls with 1000 × bootstrap replications using a MEGA computer program. The genetic diversity parameters of haplotype diversity (Hd), nucleotide diversity (pi), Tajima’s D test and Fu’s Fs statistics were calculated using a DNAsp computer program.Results: Total of fourteen (14) haplotypes of ZFY gene and seventy (70) mutation sites were detected in the Pasundan bulls. The haplotype diversity (Hd) and nucleotide diversity (pi) in Pasundan’s ZFY gene diversity were 1.00 (high) and 0.01 (low), respectively. The neutrality test of Tajima’s D and Fu’s Fs statistic values were -1.42 and -6.47, respectively. Bovine ZFY gene can be classified into two clades of ZFY-1 and ZFY-2. Therefore, the Neighbor-joining (NJ) tree (1000×bootstrap) revealed that the Pasundan cattle are classified into clade ZFY-1 together with Bos taurus (AF241273, AF465179). Meanwhile, a clade ZFY-2 consisted of Bos taurus (AF465181, DQ336536), Bos indicus (DQ336537), and Bos javanicus (DQ336578).Conclusion: The ZFY gene of Pasundan bulls were polymorphic with seventy mutation sites. Therefore, Pasundan bulls were characterized into ZFY-1 clade or Taurine lineage based on ZFY gene sequence variaton. The crossbreeding program with Bos taurus straw to increase meat production of cattle may affecting the genetic structure of Pasundan bulls since this program is widely applied in West Java through many years ago.

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Y chromosome genetic diversity and breed relationships in nativePolish cattle assessed by microsatellite markers

Cited by 4 publications

References 23 publications

Y-chromosome genetic diversity of Bos indicus cattle in close proximity to the centre of domestication

Y-chromosome genetic diversity of Bos indicus cattle in close proximity to the centre of domestication

Genetic variability of dairy cattle breeds in Lithuania

Genetic characterization and lineage analysis of Pasundan (Rancah) cattle in West Java, Indonesia: Insights from ZFY gene sequencing

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