2018
DOI: 10.1007/978-1-4939-8766-5_15
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X-Chromosome Inactivation and Escape from X Inactivation in Mouse

Abstract: X chromosome inactivation silences one X chromosome in female mammals. However, this silencing is incomplete, and some genes escape X inactivation. We describe methods to determine the chromosome- wide X inactivation status of genes in tissues or cell lines derived from mice using a combination of skewing of X inactivation and allele-specific analyses of gene expression based on RNA-seq.

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Cited by 7 publications
(7 citation statements)
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“…9 Mounting evidence indicates that this assumption is flawed, and we are only beginning to understand how escape from X inactivation affects female gene expression in different tissues and physiological contexts, including the cardiovascular system. [10][11][12] For example, incomplete X-chromosome inactivation has been implicated in sex-biased expression of endothelial inflammatory genes in women with HF with preserved ejection fraction (HFpEF). 13…”
Section: Biomarkers As Predictors Of Cvd: Why and How Does Sex Matter?mentioning
confidence: 99%
“…9 Mounting evidence indicates that this assumption is flawed, and we are only beginning to understand how escape from X inactivation affects female gene expression in different tissues and physiological contexts, including the cardiovascular system. [10][11][12] For example, incomplete X-chromosome inactivation has been implicated in sex-biased expression of endothelial inflammatory genes in women with HF with preserved ejection fraction (HFpEF). 13…”
Section: Biomarkers As Predictors Of Cvd: Why and How Does Sex Matter?mentioning
confidence: 99%
“…However, it could be a way forward, for instance in identifying the genetic make-up of female patients who experience severe COVID-19. Various methods are available to study XCI escape ( 43 , 125 ). RNA sequencing (RNAseq) and expression data to identify XCI escape relies on good methods to differentiate alleles, usually SNP frequencies to distinguish alleles at multiple loci.…”
Section: Discussionmentioning
confidence: 99%
“…XCI escape can be studied in various ways, such as bulk RNA-sequencing (RNA-seq) to assess differential allelic expression or RNA fluorescence in situ hybridization (RNA FISH) to detect nascent RNA transcripts. XCI status can also be examined indirectly via epigenetic markers such as methylation patterns ( 43 ).…”
Section: Subsectionsmentioning
confidence: 99%
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