WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees

Monnet, Anne‐Christine; Cilleros, Kévin; Mèdail, Frédéric; Albassatneh, Marwan Cheikh; Bacchetta, Gianluigi; Bagnoli, Francesca; Barina, Zoltán; Cartereau, Manuel; Casajus, Nicolas; Dimopoulos, Panayotis; Domina, Gianniantonio; Doxa, Aggeliki; Fady, Bruno; Hampe, Arndt; Matevski, Vlado; Misfud, Stephen; Nikolić, Toni; Pavon, Daniel; Roig, Anne; Barea, Estefania Santos; Spanu, Ilaria; Strid, Arne; Vendramin, Giovanni G.; Leriche, Agathe

doi:10.1038/s41597-021-00873-3

Cited by 12 publications

(15 citation statements)

References 58 publications

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“…By comparing the location of future climatic refugia with the existing biodiversity patterns of Mediterranean tree species, we showed that climatic refugia are located in areas of high species richness. Euro‐Mediterranean forests host 245 native tree species and subspecies, and a high number of endemic species (Médail et al, 2019; Monnet et al, 2021). Climatic refugia were also mainly identified in biogeographical provinces with the highest endemic species richness.…”

Section: Discussionmentioning

confidence: 99%

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Spatial heterogeneity and temporal stability characterize future climatic refugia in Mediterranean Europe

Doxa

Kamarianakis

Mazaris

2022

Global Change Biology

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Identifying areas where species that are most exposed to climate change will occur in forthcoming decades has become a priority for conservation planning (Carroll et al., 2017;Heller et al., 2015;Wang et al., 2018). The dynamically shifting climate is a major parameter driving the global redistribution of biodiversity, and is expected to force many species out of current reserves, jeopardizing the efficiency of the present, static network of protected areas (PAs), which were established to halt biodiversity declines (Araújo

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Section: Discussionmentioning

confidence: 99%

“…To tive and endemic tree species in the Mediterranean biome, as a structural component of Mediterranean biodiversity (Médail et al, 2019;Monnet et al, 2021). We estimated the species distributions inside and outside the identified climatic refugia.…”

Section: Spatial Patterns Of Climatic Refugiamentioning

confidence: 99%

Spatial heterogeneity and temporal stability characterize future climatic refugia in Mediterranean Europe

Doxa

Kamarianakis

Mazaris

2022

Global Change Biology

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“…Par exemple, Veron et al (2019) ont utilisé la base e-monocot 17 pour aider à l'exclusion des occurrences non natives des espèces dans leurs analyses. De même, Monnet et al (2021) ont écarté des occurrences douteuses d'arbres méditerranéens en confrontant les données à l'inventaire d'espèces le plus récent mené à l'échelle des pays et de leurs îles (Médail et al 2019).…”

Section: Figure 183 Des Données Téléchargées Aux Données Préparées Pour L'analyse : 1) Vérification De L'adéquation Des Données Avec La Qunclassified

“…

Les données sont souvent mises à disposition via des portails d'accès aux données comme le GBIF (Global Biodiversity Information Facility) (figure 18.1), par des consortiums de spécialistes des différents groupes taxonomiques (par exemple VertNet 1 pour les vertébrés), ou par la publication de data papers des articles permettant de décrire et publier des données d'une étude ou d'une collection naturaliste (Monnet et al 2021). L'utilisateur peut alors exporter directement les données depuis les plates-formes de consultation et de téléchargement mises à 1 www.vertnet.org.

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Utilisation des grands jeux de données naturalistes pour répondre aux enjeux scientifiques et sociétaux actuels

Monnet¹,

Haevermans²,

Archambeau³

et al. 2021

Les Collections Naturalistes Dans La Science Du XXIe Siècle

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L’informatisation des collections d’histoire naturelle et leur agrégation dans des portails globaux donnent un accès sans précédent à la richesse des collections. De la gestion des collections à l’analyse scientifique, le défi consiste à s’approprier ce changement d’échelle en regard de la quantité et de la nature des données pour répondre à de nouvelles questions dans une dynamique de science ouverte.

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“…Despite major improvements in the consolidation and accessibility of trait data, there is not yet a single-source centralised database spanning behaviour, physiology, habitat, and other trait data for a wide range of species. Existing databases are often linked by taxonomy ( e.g., FishBase (Froese & Pauly, 2010), CoralTraits (Madin et al, 2016), MammalBase (Lintulaakso, 2013), AmphiBio (Oliveira, São-Pedro, Santos-Barrera, Penone, & Costa, 2017)); trait type ( e.g., TreeOfSex (The Tree of Sex Consortium 2014), TreeBase (Boettiger & Temple Lang, 2012), Xylum Functional Traits (Borghetti, Gentilesca, Colangelo, Ripullone, & Rita, 2020)); data type ( e.g., GBIF (https://www.gbif.org/), MOL (Jetz, Thomas, Joy, Hartmann, & Mooers, 2012), TetraDensity (Santini, Isaac, & Ficetola, 2018)); or a combination of the taxonomies and traits (WooDiv (Monnet et al, 2021), CarniDiet (Middleton, Svensson, Scharlemann, Faurby, & Sandom, 2021)). A number of other databases take a more general approach in their thematic scope, but are still constrained to a limited set of traits and taxonomy ( e.g., Amniote (Myhrvold et al, 2015), Pantheria (Jones et al, 2009), BIEN (Enquist, Condit, Peet, Schildhauer, & Thiers, 2016; Maitner et al, 2018), TRY (Kattge et al, 2020)).…”

Section: Introductionmentioning

confidence: 99%

MOSAIC: A Unified Trait Database to Complement Structured Population Models

Bernard

Santos

Deere

et al. 2022

Preprint

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The ecological sciences have joined the big data revolution. However, despite exponential growth in data availability, broader interoperability amongst datasets is still needed to unlock the potential of open access. The interface of demography and functional traits is well-positioned to benefit from said interoperability. Trait-based ecological approaches have been criticised because of their inability to predict fitness components, the core of demography; likewise, demographic approaches are data-hungry, and so using traits as ecological shortcuts to understanding and forecasting population viability could offer great value. Here, we introduce MOSAIC, an open-access trait database that unlocks the demographic potential stored in the COMADRE, COMPADRE, and PADRINO open-access databases. MOSAIC data have been digitised and curated through a combination of existing datasets and additional taxonomic and/or trait records sourced from primary literature. In its first release, MOSAIC (v. 1.0.0) includes 14 trait fields for 300 animal and plant species: biomass, height, growth determination, regeneration, sexual dimorphism, mating system, hermaphrodism, sequential hermaphrodism, dispersal capacity, type of dispersal, mode of dispersal, dispersal classes, volancy, and aquatic habitat dependency. MOSAIC also includes species-level phylogenies for 1,359 species and population-specific climate data where locations are recorded. Using MOSAIC, we highlight a taxonomic mismatch of widely used trait databases with existing structured population models. Despite millions of trait records available in open-access databases, taxonomic overlap between open-access demographic and trait databases is <5%. We identify where traits of interest to ecologists can benefit from database integration and start to quantify traits that are poorly quantified (e.g., growth determination, modularity). The MOSAIC database evidences the importance of improving interoperability in open-access efforts in ecology as well as the need for complementary digitisation to fill targeted taxonomic gaps. In addition, MOSAIC highlights emerging challenges associated with the disparity between locations where different trait records are sourced.

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WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees

Cited by 12 publications

References 58 publications

Spatial heterogeneity and temporal stability characterize future climatic refugia in Mediterranean Europe

Spatial heterogeneity and temporal stability characterize future climatic refugia in Mediterranean Europe

Utilisation des grands jeux de données naturalistes pour répondre aux enjeux scientifiques et sociétaux actuels

MOSAIC: A Unified Trait Database to Complement Structured Population Models

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