At least 20% of all arthropods and some nematode species are infected with intracellular bacteria of the genus Wolbachia. This highly diverse genus has been subdivided into eight "supergroups" (A to H) on the basis of nucleotide sequence data. Here, we report the discovery of a new Wolbachia supergroup recovered from the spider mite species Bryobia species V (Acari: Tetranychidae), based on the sequences of three protein-coding genes (ftsZ, gltA, and groEL) and the 16S rRNA gene. Other tetranychid mites possess supergroup B Wolbachia strains. The discovery of another Wolbachia supergroup expands the known diversity of Wolbachia and emphasizes the high variability of the genus. Our data also clarify the existing supergroup structure and highlight the use of multiple gene sequences for robust phylogenetic analysis. In addition to previous reports of recombination between the arthropod-infecting supergroups A and B, we provide evidence for recombination between the nematode-infecting supergroups C and D. Robust delineation of supergroups is essential for understanding the origin and spread of this common reproductive parasite and for unraveling mechanisms of host adaptation and manipulation across a wide range of hosts.Wolbachia is a genus of endosymbiotic alphaproteobacteria infecting a wide range of arthropods and filarial nematodes. In arthropods, Wolbachia often manipulates the reproductive mode of its host, causing parthenogenesis, feminization, cytoplasmic incompatibility, or male killing (48). In nematodes, and also in some arthropods, Wolbachia is an obligate symbiont required for host fertility (11,39). It is estimated that more than 20% of arthropod species are infected with Wolbachia, including all major insect orders and some crustaceans and chelicerates (16,31,33,60). The genus Wolbachia is genetically highly diverse and is divided into eight "supergroups" (A to H) (35). Currently, all of the supergroups are thought to represent one species, Wolbachia pipientis (35). Supergroups A and B were described first and are most commonly found among arthropod species (17,60,61). Supergroups C and D are restricted to filarial nematodes (9). Since the description of these four supergroups, the number of host taxa investigated has grown and the accuracy of detection has improved (investigating multiple individuals per host species and using a combination of primers). This led to the discovery of new Wolbachia strains and new host species. For example, supergroup F was described in 2002 (34), yet the known diversity and geographic range of host species infected with the supergroup is rapidly expanding. It has been detected in both nematodes and several major arthropod orders (in Chelicerata, scorpions [Scorpiones