Abstract:An alarming disease caused by the new severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) named COVID-19 has emerged as an unprecedented public health problem and ignited a world health crisis. As opposed to what was believed at the beginning of the pandemic, the virus has not only spread but persevere causing secondary waves and challenging the concept of herd immunity against viral infections. While the majority of SARS-CoV-2-infected individuals may remain asymptomatic, a fraction of individuals ma… Show more
“…Therefore, although promising, these two mediators should be considered carefully as targets for COVID-19 therapy with anti-IL-6 and anti-TNF monoclonal antibodies. Regarding the Interferon pathway, specific polymorphisms in genes related to cytokines are strongly associated with disease outcome, such as Interferon related genes (34,35). Recent investigations have shown that a worst COVID-19 outcome is closely associated to polymorphisms in genes related to the production of proinflammatory IFN-g and IL-12 (25).…”
Section: Discussionmentioning
confidence: 99%
“…In fact, our results show lower levels of IFN-g in the airway of critically ill COVID-19 patients that progress to death, which suggests the protective role of this cytokine against SARS-CoV-2 infection. In addition, high expression of IFNAR2 interferon receptor subunit reduced the chances of severe COVID-19, indicating that the proinflammatory profile of cytokines are important to disease outcome in COVID-19 (34,35). In fact, lower levels of circulating IFN-g were associated to a higher risk of lung fibrosis in COVID-19 patients (36).…”
In the present study, the levels of serum and airway soluble chemokines, pro-inflammatory/regulatory cytokines, and growth factors were quantified in critically ill COVID-19 patients (total n=286) at distinct time points (D0, D2-6, D7, D8-13 and D>14-36) upon Intensive Care Unit (ICU) admission. Augmented levels of soluble mediators were observed in serum from COVID-19 patients who progress to death. An opposite profile was observed in tracheal aspirate samples, indicating that systemic and airway microenvironment diverge in their inflammatory milieu. While a bimodal distribution was observed in the serum samples, a unimodal peak around D7 was found for most soluble mediators in tracheal aspirate samples. Systems biology tools further demonstrated that COVID-19 display distinct eccentric soluble mediator networks as compared to controls, with opposite profiles in serum and tracheal aspirates. Regardless the systemic-compartmentalized microenvironment, networks from patients progressing to death were linked to a pro-inflammatory/growth factor-rich, highly integrated center. Conversely, patients evolving to discharge exhibited networks of weak central architecture, with lower number of neighborhood connections and clusters of pro-inflammatory and regulatory cytokines. All in all, this investigation with robust sample size landed a comprehensive snapshot of the systemic and local divergencies composed of distinct immune responses driven by SARS-CoV-2 early on severe COVID-19.
“…Therefore, although promising, these two mediators should be considered carefully as targets for COVID-19 therapy with anti-IL-6 and anti-TNF monoclonal antibodies. Regarding the Interferon pathway, specific polymorphisms in genes related to cytokines are strongly associated with disease outcome, such as Interferon related genes (34,35). Recent investigations have shown that a worst COVID-19 outcome is closely associated to polymorphisms in genes related to the production of proinflammatory IFN-g and IL-12 (25).…”
Section: Discussionmentioning
confidence: 99%
“…In fact, our results show lower levels of IFN-g in the airway of critically ill COVID-19 patients that progress to death, which suggests the protective role of this cytokine against SARS-CoV-2 infection. In addition, high expression of IFNAR2 interferon receptor subunit reduced the chances of severe COVID-19, indicating that the proinflammatory profile of cytokines are important to disease outcome in COVID-19 (34,35). In fact, lower levels of circulating IFN-g were associated to a higher risk of lung fibrosis in COVID-19 patients (36).…”
In the present study, the levels of serum and airway soluble chemokines, pro-inflammatory/regulatory cytokines, and growth factors were quantified in critically ill COVID-19 patients (total n=286) at distinct time points (D0, D2-6, D7, D8-13 and D>14-36) upon Intensive Care Unit (ICU) admission. Augmented levels of soluble mediators were observed in serum from COVID-19 patients who progress to death. An opposite profile was observed in tracheal aspirate samples, indicating that systemic and airway microenvironment diverge in their inflammatory milieu. While a bimodal distribution was observed in the serum samples, a unimodal peak around D7 was found for most soluble mediators in tracheal aspirate samples. Systems biology tools further demonstrated that COVID-19 display distinct eccentric soluble mediator networks as compared to controls, with opposite profiles in serum and tracheal aspirates. Regardless the systemic-compartmentalized microenvironment, networks from patients progressing to death were linked to a pro-inflammatory/growth factor-rich, highly integrated center. Conversely, patients evolving to discharge exhibited networks of weak central architecture, with lower number of neighborhood connections and clusters of pro-inflammatory and regulatory cytokines. All in all, this investigation with robust sample size landed a comprehensive snapshot of the systemic and local divergencies composed of distinct immune responses driven by SARS-CoV-2 early on severe COVID-19.
“…IL1 RN (rs315952—T/C) and IL4 (rs2070874—C/T/ IL4 + 1059 C/T) SNPs have been associated with COVID‐19 severity. 55 , 56 The SNPs in the IL6 gene have been associated with pneumonia and COPD and also certain viral infections such as hepatitis B virus, hepatitis C virus (HCV), and influenza virus. 57 , 58 , 59 Low rate of IL6 CC (rs1800795) SNP was related to the persistence of HCV infection.…”
Innate and acquired immunity responses are crucial for viral infection elimination. However, genetic variations in coding genes may exacerbate the inflammation or initiate devastating cytokine storms which poses severe respiratory conditions in coronavirus disease-19 (COVID-19). Host genetic variations in particular those related to the immune responses determine the patients' susceptibility and COVID-19 severity and pathophysiology. Gene polymorphisms such as single nucleotide polymorphisms (SNPs) of interferons, TNF, IL1, IL4, IL6, IL7, IL10, and IL17 predispose patients to the severe form of COVID-19 or severe acute respiratory syndrome coronavirus-2 (SARS-COV-2). These variations mainly alter the gene expression and cause a severe response by B cells, T cells, monocytes, neutrophils, and natural killer cells participating in a cytokine storm. Moreover, cytokines and chemokines SNPs are associated with the severity of COVID-19 and clinical outcomes depending on the corresponding effect. Additionally, genetic variations in genes encoding toll-like receptors (TLRs) mainly TLR3, TLR7, and TLR9 have been related to the COVID-19 severe respiratory symptoms. The specific relation of these mutations with the novel variants of concern (VOCs) infection remains to be elucidated. Genetic variations mainly within genes encoding proinflammatory cytokines, cytokine receptors, and TLRs predispose patients to COVID-19 disease severity. Understanding host immune gene variations associated with the SARS-COV-2 infection opens insights to control the pathophysiology of emerging viral infections.
“…The different expression of cytokines caused by point mutations in these genes interferes in the evolution of the immune response and in the different clinical outcomes of COVID-19. These polymorphisms can also affect the response to the use of therapies and vaccines [164].…”
The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is responsible for the current pandemic affecting almost all countries in the world. SARS-CoV-2 is the agent responsible for coronavirus disease 19 (COVID-19), which has claimed millions of lives around the world. In most patients, SARS-CoV-2 infection does not cause clinical signs. However, some infected people develop symptoms, which include loss of smell or taste, fever, dry cough, headache, severe pneumonia, as well as coagulation disorders. The aim of this work is to report genetic factors of SARS-CoV-2 and host-associated to severe COVID-19, placing special emphasis on the viral entry and molecules of the immune system involved with viral infection. Besides this, we analyze SARS-CoV-2 variants and their structural characteristics related to the binding to polymorphic angiotensin-converting enzyme type 2 (ACE2). Additionally, we also review other polymorphisms as well as some epigenetic factors involved in the immunopathogenesis of COVID-19. These factors and viral variability could explain the increment of infection rate and/or in the development of severe COVID-19.
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