Although advancements in nontargeted analysis have made
it possible
to detect hundreds of chemical contaminants in a single run, the current
environmental toxicology approaches lag behind, precluding the transition
from analytical chemistry efforts to health risk assessment. We herein
highlighted a recently developed “top-down” bioanalytical
method, protein Affinity Purification with Nontargeted Analysis (APNA),
to screen for bioactive chemical contaminants at the “exposome-wide”
level. To achieve this, a tagged functional protein is employed as
a “bait” to directly isolate bioactive chemical contaminants
from environmental mixtures, which are further identified by nontargeted
analysis. Advantages of this protein-guided approach, including the
discovery of new bioactive ligands as well as new protein targets
for known chemical contaminants, were highlighted by several case
studies. Encouraged by these successful applications, we further proposed
a framework, i.e., the environmental Chemical-Protein Interaction
Network (eCPIN), to construct a complete map of the 7 billion binary
interactions between all chemical contaminants (>350,000) and human
proteins (∼20,000) via APNA. The eCPIN could be established
in three stages through strategically prioritizing the ∼20,000
human proteins, such as focusing on the 48 nuclear receptors (e.g.,
thyroid hormone receptors) in the first stage. The eCPIN will provide
an unprecedented throughput for screening bioactive chemical contaminants
at the exposome-wide level and facilitate the identification of molecular
initiating events at the proteome-wide level.