“…Semi-quantitative data (Jagoe, 1996) were collected from each subsample based on relative condition (tissue architecture, cellular integrity, zooxanthellae abundance, pathological changes) at the time of fixation (0 = Excellent, 1 = Very Good, 2 = Good, 3 = Fair, 4 = Poor, 5 = Very Poor) and severity or intensity of tissue changes from normal (0 = Within Normal Limits, 1 = Minimal, 2 = Mild, 3 = Moderate, 4 = Marked, 5 = Severe) (see Table S1). Histoslides of A. cervicornis and A. palmata collected from the 1970s in the Florida Keys (the earliest tissue samples located, before tissue loss was reported from this region) were used to develop the “within normal limits” criteria for general coral tissue condition and zooxanthellae condition/abundance scores, six specific cell or tissue parameters of polyp health, bacterial aggregates (Peters, Oprandy & Yevich, 1983), and suspect rickettsia-like organisms (RLOs) (Casas et al, 2004; CS Friedman, pers. comm., 2010).…”