Abnormal CAG repeat expansion in the ␣1A voltagedependent calcium channel gene is associated with spinocerebellar ataxia type 6, an autosomal dominant cerebellar ataxia with a predominant loss of the Purkinje cell. A reverse transcriptase-polymerase chain reaction analysis of mRNA from mouse Purkinje cells revealed a predominant expression of the ␣1A channel lacking an asparagine-proline (NP) stretch in the domain IV (␣1A(؊NP)). Human ␣1A channels carrying various polyglutamine length with or without NP were expressed in HEK293 cells, and channel properties were compared using a whole-cell voltage clamp technique. ␣1A(؊NP), corresponding to P-type channel, with 24 and 28 polyglutamines found in patients showed the voltage dependence of inactivation shifting negatively by 6 and 11 mV, respectively, from the 13 polyglutamine control. Contrarily, the ␣1A channel with NP (␣1A(؉NP)), corresponding to Q-type channel, with 28 polyglutamines exhibited a positive shift of 5 mV. These results suggest that altered function of ␣1A(؊NP) may contribute to degeneration of Purkinje cells, which express predominantly ␣1A(؊NP), due to the reduced Ca 2؉ influx resulting from the negative shift of voltage-dependent inactivation. On the other hand, other types of neurons, expressing both ␣1A(؊NP) and ␣1A(؉NP), may survive because the positive shift of voltage-dependent inactivation of ␣1A(؉NP) compensates Ca 2؉ influx.