Introduction: Any irreparable aberration in the physical, anatomical, or functional form present in an unborn child before birth is referred to as a congenital malformation. Advancement in ultrasonography leads to more and more detection of these anomalies. Due to improved imaging capabilities, prenatal malformations are now discovered earlier, giving antenatal care providers or doctors the chance to provide counselling with the option of terminating the pregnancy in situations of lethal defects. Material and methods: This is a prospective observational study done at tertiary care teaching hospital. Period of the study was one year from January to December 2022.During this period total 513 cases came for medical termination of pregnancy at tertiary care centre out of which 131 cases were enrolled for the study as per the inclusion criteria. All those pregnancies were included in study population who were between 13-to-28-week gestational weeks, and came with ultrasonography report of congenital structural defect in fetus. Epidemiological data like age, residence, their gravida, type of structural defects, history of previous cesarean sections was noted and analysed for their distribution and presentation. Results: in our study it was found that most of the cases were primigravida, of age 20 -30 years, and having most common anomalies belong to central nervous system followed by multiple organ system involvement. Most of CNS anomalies were anencephaly, hydrocephalus, and acrania exencephaly sequence. Conclusions: Birth defects rank among the most frequent grounds given by couples choosing second trimester. In our study, the combination of anencephaly and acrania anencephaly was one of the main factors of birth defects reported to a centre that could be quickly identified by experienced sonologists in the late first trimester and could be terminated within safe limits, further keeping antenatal women within a safe window of medical termination of pregnancy and lowering maternal morbidity.