Knowledge about the length of xylem vessels is essential to understand water transport in plants because these multicellular units show a 100-fold variation, from less than a centimeter to many meters. However, the available methods to estimate vessel length (VL) distribution are excessively time consuming and do not allow large and indepth surveys. Here, we describe a semi-automated method to measure hydraulically-weighted VL (VL H) using an automated Pneumatron device. Gas conductivity of a xylem tissue with a certain length is estimated with the Pneumatron in a straightforward and precise way, theoretically similar to the airinjection method. Besides giving results similar to the silicone-injection method, the pneumatic-based method enables faster and easier measurements of more than 50 samples per day, which is a significant advantage. Herein, a detailed description of the methodology is presented as well as the software and an R-script for data analysis. The method described represents an important contribution to studies on plant hydraulic architecture and can improve our understanding about the role of VL H in plant performance under varying water availability.