2021
DOI: 10.48550/arxiv.2106.11480
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VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning

Abstract: Recent advances in bioimaging have provided scientists a superior high spatial-temporal resolution to observe dynamics of living cells as 3D volumetric videos. Unfortunately, the 3D biomedical video analysis is lagging, impeded by resource insensitive human curation using off-the-shelf 3D analytic tools. Herein, biologists often need to discard a considerable amount of rich 3D spatial information by compromising on 2D analysis via maximum intensity projection. Recently, pixel embedding based cell instance segm… Show more

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Cited by 3 publications
(2 citation statements)
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“…Image processing based on deep learning has been applied invarious complex industrial situations [29]. A simple multistream learning method is proposed in [30], which implements an end-to-end framework for one-stage 3D cell instance segmentation and tracking without numerous parameter adjustments. The algorithm adopts novel seed selection and early stopping methods to deal with the Euclidean distance metric, which greatly improves the computing speed and reduces the graphics processing unit (GPU) memory consumption [31].…”
Section: Related Workmentioning
confidence: 99%
“…Image processing based on deep learning has been applied invarious complex industrial situations [29]. A simple multistream learning method is proposed in [30], which implements an end-to-end framework for one-stage 3D cell instance segmentation and tracking without numerous parameter adjustments. The algorithm adopts novel seed selection and early stopping methods to deal with the Euclidean distance metric, which greatly improves the computing speed and reduces the graphics processing unit (GPU) memory consumption [31].…”
Section: Related Workmentioning
confidence: 99%
“…With the development of high-performance GPU, deep learning techniques have been widely applied to industrial inspection fields including steel [11][12][13][14][15][16][17][18][19], tire [20][21][22][23] and fabric [24,25] defect detection and other fields [26][27][28][29]. These methods can be divided into image classification [11][12][13], object detection [14][15][16] and segmentation methods [17][18][19].…”
Section: Introductionmentioning
confidence: 99%