In this article, we develop a second-order nonlinear filter based stabilization scheme for high Reynolds number flows. We prove the unconditional stability of the method, establish the second order consistency and discuss the dynamical tuning of the relaxation parameter. The scheme is then validated against experimental data for an isothermal turbulent flow in a Staggered Tube Bundle at Reynolds number of 18,000. Numerical results are found to be in an overall good qualitative and quantitative agreement with the benchmark results.