DnaJ is an essential cochaperone of mammalian heat shock cognate 70 (hsc70) protein. We previously found that dj2 (HSDJ/hdj-2/rdj1), rather than dj1 (hsp40/hdj-1), is a partner DnaJ for the hsc70-based chaperone system. Here, we compared the distribution of dj1, dj2, and the newly found dj3 (cpr3/DNJ3/HIRIP4/rdj2) in cultured cells. Both dj3 as well as dj2 were farnesylated and were ubiquitously expressed. In immunocytochemical and subfractionation studies, these two proteins colocalized with hsc70 under normal conditions. However, dj1 and hsc70 apparently colocalized in the nucleoli after heat shock. Simultaneous depletion of dj2 and dj3 from rabbit reticulocyte lysate markedly reduced mitochondrial import of pre-ornithine transcarbamylase and refolding of guanidine-denatured luciferase. Re-addition of either dj2 or dj3 led to recovery of these reactions. In a reconstituted system, both hsc70-dj2 and hsc70-dj3 were effective in protein refolding. Anti-apoptotic protein bag-1 further stimulated ATP hydrolysis and protein refolding by both pairs. Thus, dj2 and dj3 are the partner DnaJs of hsc70 within the cell, functionally similar and much more efficient than dj1, and bag-1 is a positive cochaperone of the hsc70-dj2 and hsc70-dj3 systems.The heat-shock cognate protein 70 (hsc70) 1 is a major molecular chaperone present in the mammalian cytosol and mediates various cellular processes, including protein folding and traffic. Among numerous cochaperones for hsc70 (1), an essential group is the DnaJ family (2). The mammalian dj2 (HSDJ/ hdj2/rdj1/hsj2) (3-6) and dj3 (cpr3/DNJ3/HIRIP4/rdj2) (5, 7) contain all the domains found in bacterial DnaJ. These orthodox members of the DnaJ subfamily have J-, G/F-, and zincfinger domains. The zinc-finger domain of bacterial DnaJ coordinates two zinc atoms and is important for binding to denatured protein substrate (8). dj2 and dj3 also have the "CAAX" prenylation motif at their COOH termini, and we showed that dj2 is farnesylated (9). The protein sequence of dj3 is 55% identical to the dj2 sequence. dj3, dj2, and hsc70 are all highly conserved among mammals (99% identity between human and rat proteins).On the other hand, dj1 (hsp40/hdj-1) (10) is a noncanonical member of DnaJ, which lacks the zinc-finger domain. Because dj1 was identified earlier among mammalian DnaJs, many studies of the hsc70 chaperone system were done on dj1. One proposed function for the hsc70-dj1 system is its involvement in folding of nascent polypeptides (11). The in vitro protein refolding mediated by the hsc70-dj1 system was also reported (12).We previously developed a system of depletion of hsc70, dj1, and dj2 from reticulocyte lysates and of their re-addition, to assess the roles of these chaperones (13). We found that the hsc70-dj2 chaperone pair is required for mitochondrial import of pre-ornithine transcarbamylase (pOTC) and refolding of chemically denatured luciferase. Unexpectedly, dj1 depletion had little effect on luciferase refolding. A reconstituted system using purified hsc70 and dj2 at physi...