2018
DOI: 10.7287/peerj.preprints.26896
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Visualization of Biomedical Data

Abstract: The rapid increase in volume and complexity of biomedical data requires changes in research, communication, training, and clinical practices. This includes learning how to effectively integrate automated analysis with high-data-density visualizations that clearly express complex phenomena. In this review, we summarize key principles and resources from data visualization research that address this difficult challenge. We then survey how visualization is being used in a selection of emerging biomedical research … Show more

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Cited by 20 publications
(34 citation statements)
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“…However, with the growth in available data and the improvement in statistical tools, data exploration through visualisation has gained importance for surveillance and monitoring activities. The field has evolved with contributions of computer science merging scientific visualisation, information visualisation and visual analytics, making visualisation an important part of surveillance data analyses 22 ; it is a powerful tool to understand complex multilayer data, which are not easily captured by simple indicators. It has a major impact on how temporal and spatial analyses are conducted and reported.…”
Section: Data Visualisationmentioning
confidence: 99%
See 1 more Smart Citation
“…However, with the growth in available data and the improvement in statistical tools, data exploration through visualisation has gained importance for surveillance and monitoring activities. The field has evolved with contributions of computer science merging scientific visualisation, information visualisation and visual analytics, making visualisation an important part of surveillance data analyses 22 ; it is a powerful tool to understand complex multilayer data, which are not easily captured by simple indicators. It has a major impact on how temporal and spatial analyses are conducted and reported.…”
Section: Data Visualisationmentioning
confidence: 99%
“…One major change is the possibility of tailoring visualisation surveillance output to users’ needs through interactive data visualisation. 22…”
Section: Data Visualisationmentioning
confidence: 99%
“…These ordered events provide insight into the causal flow of information underlying transitions in cellular state. These insights, in turn, have the potential to lead to fundamental advances in biology and biomedical sciences-however, realizing this potential requires improving the analysis methods used, which are often inadequate with existing data sets 1,2 , especially from multiomics experiments.…”
Section: Introductionmentioning
confidence: 99%
“…When analyzing data from such experiments, a common first step is to partition the (typically) tens of thousands of abundance time profiles found into tens of clusters, each with similar temporal changes that are then visualized in a single profile plot 1,2 (Fig. 1).…”
Section: Introductionmentioning
confidence: 99%
“…The study of genome-scale metabolic models has grown strongly in recent years. This has stimulated the development of visualization software of large models of metabolism [1][2][3] for reviews. At the same time, new methods of studying metabolic fluxes have emerged which lead to the enumeration of EFMs, Flux Balance Analysis (FBA) [4,5] for reviews alongside more traditional methods such as dynamical systems and Metabolic Control Analysis [6][7][8] using the rate functions of the metabolic steps [9,10].…”
Section: Introductionmentioning
confidence: 99%