Matrix‐assisted laser desorption/ionization (MALDI) is a ‘soft’ ionization method which enables the detection of several molecules including proteins, peptides, amino acids, sugars, lipids, and metabolites, in biological samples. The versatility of MALDI makes it essential analytical method to detect the molecules of interest in the complex biological structures. To take this advantage of MALDI, matrix‐assisted laser desorption/ionization mass spectrometry imaging (MALDI‐MSI) has been developed as a molecular imaging method to visualize the spatial distribution of molecules in biological sample section. It has been reported that almost all kinds of molecules, such as biomolecules and administrated drugs or food factors, in biological samples can be visualized by MALDI‐MSI. Because many of these molecules cannot be visualized with the exception of MALDI‐MSI, MALDI‐MSI opens a new frontier in several fields such as medical science, pharmaceutical science, plant science, and food science. To obtain biologically meaningful information of the distribution of molecules of interest, researcher should understand the basic experimental steps and potential applications of MALDI‐MSI. In this article, principle, basic experimental procedure, and applications of MALDI‐MSI are described.