Abstract:The emergence of nonlinear optical (NLO) measurement approaches has provided new windows into molecular and macromolecular structure within thin films and materials. The greatest barriers in mining this structural information increasingly appear in meaningfully relating these macroscopic results back to molecular-level descriptions, driven largely by the increasing complexity of the molecular systems and interfacial architectures under interrogation. As NLO methods continue their expansion into increasingly di… Show more
“…1. The relationships between the visual representations and the tabulated tensor elements have been detailed previously (Moad et al, 2007;Wampler et al, 2007). In this case, the relatively large and positive xxx SHG tensor element corresponds to the amplitude of the lobe directed in the x direction in the hyperellipsoid representation and the x component of the vector intersecting the unit sphere along the x axis.…”
A symmetry-additive ab initio model for second-harmonic generation (SHG) activity of protein crystals was applied to assess the likely protein-crystal coverage of SHG microscopy. Calculations were performed for 250 proteins in nine pointgroup symmetries: a total of 2250 crystals. The model suggests that the crystal symmetry and the limit of detection of the instrument are expected to be the strongest predictors of coverage of the factors considered, which also included secondary-structural content and protein size. Much of the diversity in SHG activity is expected to arise primarily from the variability in the intrinsic protein response as well as the orientation within the crystal lattice. Two or more ordersof-magnitude variation in intensity are expected even within protein crystals of the same symmetry. SHG measurements of tetragonal lysozyme crystals confirmed detection, from which a protein coverage of $84% was estimated based on the proportion of proteins calculated to produce SHG responses greater than that of tetragonal lysozyme. Good agreement was observed between the measured and calculated ratios of the SHG intensity from lysozyme in tetragonal and monoclinic lattices.
“…1. The relationships between the visual representations and the tabulated tensor elements have been detailed previously (Moad et al, 2007;Wampler et al, 2007). In this case, the relatively large and positive xxx SHG tensor element corresponds to the amplitude of the lobe directed in the x direction in the hyperellipsoid representation and the x component of the vector intersecting the unit sphere along the x axis.…”
A symmetry-additive ab initio model for second-harmonic generation (SHG) activity of protein crystals was applied to assess the likely protein-crystal coverage of SHG microscopy. Calculations were performed for 250 proteins in nine pointgroup symmetries: a total of 2250 crystals. The model suggests that the crystal symmetry and the limit of detection of the instrument are expected to be the strongest predictors of coverage of the factors considered, which also included secondary-structural content and protein size. Much of the diversity in SHG activity is expected to arise primarily from the variability in the intrinsic protein response as well as the orientation within the crystal lattice. Two or more ordersof-magnitude variation in intensity are expected even within protein crystals of the same symmetry. SHG measurements of tetragonal lysozyme crystals confirmed detection, from which a protein coverage of $84% was estimated based on the proportion of proteins calculated to produce SHG responses greater than that of tetragonal lysozyme. Good agreement was observed between the measured and calculated ratios of the SHG intensity from lysozyme in tetragonal and monoclinic lattices.
“…While it may initially appear overly simplistic to represent the hyperpolarizability of collagen using calculations for just the NMA building block, previous computational and experimental studies support the validity of this approach (37,(49)(50)(51). For all but the aromatic amino acids, the hyperpolarizabilities of polypeptides formed from the common amino acids are dominated by the amide unit connecting amino acid groups, which exhibits a relatively large hyperpolarizability.…”
Nonlinear optical Stokes ellipsometric (NOSE) microscopy was demonstrated for the analysis of collagen-rich biological tissues. NOSE is based on polarization-dependent second harmonic generation imaging. NOSE was used to access the molecular-level distribution of collagen fibril orientation relative to the local fiber axis at every position within the field of view. Fibril tilt-angle distribution was investigated by combining the NOSE measurements with ab initio calculations of the predicted molecular nonlinear optical response of a single collagen triple helix. The results were compared with results obtained previously by scanning electron microscopy, nuclear magnetic resonance imaging, and electron tomography. These results were enabled by first measuring the laboratory-frame Jones nonlinear susceptibility tensor, then extending to the local-frame tensor through pixel-by-pixel corrections based on local orientation.
“…The process of SHG can be qualitatively illustrated with a relatively simple anharmonic oscillator model (Figure 1) (7). Consider the linear interactions between a molecule and an incident oscillating field within the same framework: A polarization is induced by light within the medium through the harmonic “sloshing” of the electron cloud associated with the molecule.…”
Section: Fundamentals Of Second-order Nonlinear Optical Imaging Ofmentioning
Second-order nonlinear optical imaging of chiral crystals (SONICC) is an emerging technique for crystal imaging and characterization. We provide a brief overview of the origin of second harmonic generation signals in SONICC and discuss recent studies using SONICC for biological applications. Given that they provide near-complete suppression of any background, SONICC images can be used to determine the presence or absence of protein crystals through both manual inspection and automated analysis. Because SONICC creates high-resolution images, nucleation and growth kinetics can also be observed. SONICC can detect metastable, homochiral crystalline forms of amino acids crystallizing from racemic solutions, which confirms Ostwald’s rule of stages for crystal growth. SONICC’s selectivity, based on order, and sensitivity, based on background suppression, make it a promising technique for numerous fields concerned with chiral crystal formation.
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