2009
DOI: 10.1093/nar/gkn739
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VirusMINT: a viral protein interaction database

Abstract: Understanding the consequences on host physiology induced by viral infection requires complete understanding of the perturbations caused by virus proteins on the cellular protein interaction network. The VirusMINT database (http://mint.bio.uniroma2.it/virusmint/) aims at collecting all protein interactions between viral and human proteins reported in the literature. VirusMINT currently stores over 5000 interactions involving more than 490 unique viral proteins from more than 110 different viral strains. The wh… Show more

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Cited by 185 publications
(176 citation statements)
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“…On this point, an interesting finding was the observed lopinavir-induced down-regulation of GFAP which is known to be capable of inhibiting the proteasome [25]. Since p53 is a target of high-risk HPV E6, we searched the Virus Molecular INTeraction (VirusMINT) database [26] for any other known E6 and E7 targeted proteins which are affected by lopinavir treatment (Table 1). At this time, only Tp53 is a confirmed target of high-risk HPV.…”
Section: Discussionmentioning
confidence: 99%
“…On this point, an interesting finding was the observed lopinavir-induced down-regulation of GFAP which is known to be capable of inhibiting the proteasome [25]. Since p53 is a target of high-risk HPV E6, we searched the Virus Molecular INTeraction (VirusMINT) database [26] for any other known E6 and E7 targeted proteins which are affected by lopinavir treatment (Table 1). At this time, only Tp53 is a confirmed target of high-risk HPV.…”
Section: Discussionmentioning
confidence: 99%
“…In addition to the general interaction data, SDREM uses condition-specific time-series data and a small set of proteins that are known to sense the environmental stress, interact with the infecting agent, or play some other role in initiating the response as input. In many cases, such proteins are either known (Kanehisa and Goto 2000) or can be experimentally determined using mass spectrometry or yeast two-hybrid experiments (e.g., in the response to viral infection) (Chatr-aryamontri et al 2009;Fu et al 2009;Mukhtar et al 2011).…”
Section: Resultsmentioning
confidence: 99%
“…Endogenous PPI data were assembled from the IntAct database [15]; there are a total of 35,303 endogenous interactions. Human-virus PPI data were taken principally from VirusMINT [16] and supplemented with additional reports from IntAct; this produced an initial set of 1,814 exogenous interactions. Exogenous interactions were filtered to remove redundancy (e.g., orthologous viral proteins from different strains with the same human protein target).…”
Section: Constructing Binary and Structural Human-virus Interaction Nmentioning
confidence: 99%