Abstract:Aim::This study aimed to detect putative virulence genes in Arcobacter species of animal and human origin.Materials and Methods::A total of 41 Arcobacter isolates (16 Arcobacter butzleri, 13 Arcobacter cryaerophilus, and 12 Arcobacter skirrowii) isolated from diverse sources such as fecal swabs of livestock (21), raw foods of animal origin (13), and human stool samples (7) were subjected to a set of six uniplex polymerase chain reaction assays targeting Arcobacter putative virulence genes (ciaB, pldA, tlyA, mv… Show more
“…Furthermore, we detected cadF in 40% of isolates, which is in concordance with other studies reporting the presence of cadF in 10-62% of isolates [25,26,[28][29][30]]. While we were not able to detect any further virulence genes in A. cryaerophilus, other studies have reported the presence of cj1349 in 20-77% of isolates [25,26,[28][29][30], and also the genes hecB, hecA, and irgA were identified more often than in our study [25]. These differences might be due to the genomic heterogeneity in primer binding sequences.…”
Section: Virulence Genessupporting
confidence: 92%
“…Our study revealed the abundance of ten putative virulence genes with homologies to virulence factors of other bacteria, particularly C. jejuni. In agreement with our data, six of these genes, i.e., ciaB, cj1349, cadF, tlyA, pldA, and mviN, have been detected most frequently in A. butzleri strains isolated from various sources, with prevalences ranging from 66 to 100% [11,23,[25][26][27][28][29][30][31]. We found hecB, hecA and irgA less frequently and at lower rates as compared to other reports [11,23,25,27,29,31,32].…”
Background: Arcobacter constitute emerging food-and waterborne pathogens causing gastroenteritis in humans, but the underlying mechanisms are only incompletely understood. We therefore characterized Arcobacter isolates derived from human stool samples that had been collected during a prospective prevalence study in Germany in vitro. Thirty-six bacterial isolates belonging to the species A. butzleri (n = 24), A. cryaerophilus (n = 10) and A. lanthieri (n = 2) were genotyped by ERIC-PCR, the presence of 10 putative virulence genes was assessed and cytotoxic effects on the human intestinal cell line HT-29/B6 were analyzed applying the WST-assay. Results: Genotyping revealed high genetic diversity within the species A. butzleri, A. cryaerophilus and A. lanthieri. Both, A. butzleri and A. lanthieri encoded for a large number of putative virulence genes, while fewer genes were detectable in A. cryaerophilus isolates. Notably, the three cytolethal distending toxin (CDT) genes cdtA, cdtB and cdtC were abundant in both A. lanthieri isolates. Furthermore, all A. butzleri and A. lanthieri, but only one of the A. cryaerophilus isolates exerted cytotoxic effects. Conclusions: Our study provides evidence for the abundance of putative virulence genes in Arcobacter isolates and prominent cytotoxic effects of A. butzleri and A. lanthieri in vitro. The presence of cdtA, cdtB, cdtC in A. lanthieri points towards CDT secretion as potential mechanism underlying cytotoxicity as opposed to A. butzleri. However, the association of the Arcobacter virulence factors detected and human morbidity should be addressed in future studies.
“…Furthermore, we detected cadF in 40% of isolates, which is in concordance with other studies reporting the presence of cadF in 10-62% of isolates [25,26,[28][29][30]]. While we were not able to detect any further virulence genes in A. cryaerophilus, other studies have reported the presence of cj1349 in 20-77% of isolates [25,26,[28][29][30], and also the genes hecB, hecA, and irgA were identified more often than in our study [25]. These differences might be due to the genomic heterogeneity in primer binding sequences.…”
Section: Virulence Genessupporting
confidence: 92%
“…Our study revealed the abundance of ten putative virulence genes with homologies to virulence factors of other bacteria, particularly C. jejuni. In agreement with our data, six of these genes, i.e., ciaB, cj1349, cadF, tlyA, pldA, and mviN, have been detected most frequently in A. butzleri strains isolated from various sources, with prevalences ranging from 66 to 100% [11,23,[25][26][27][28][29][30][31]. We found hecB, hecA and irgA less frequently and at lower rates as compared to other reports [11,23,25,27,29,31,32].…”
Background: Arcobacter constitute emerging food-and waterborne pathogens causing gastroenteritis in humans, but the underlying mechanisms are only incompletely understood. We therefore characterized Arcobacter isolates derived from human stool samples that had been collected during a prospective prevalence study in Germany in vitro. Thirty-six bacterial isolates belonging to the species A. butzleri (n = 24), A. cryaerophilus (n = 10) and A. lanthieri (n = 2) were genotyped by ERIC-PCR, the presence of 10 putative virulence genes was assessed and cytotoxic effects on the human intestinal cell line HT-29/B6 were analyzed applying the WST-assay. Results: Genotyping revealed high genetic diversity within the species A. butzleri, A. cryaerophilus and A. lanthieri. Both, A. butzleri and A. lanthieri encoded for a large number of putative virulence genes, while fewer genes were detectable in A. cryaerophilus isolates. Notably, the three cytolethal distending toxin (CDT) genes cdtA, cdtB and cdtC were abundant in both A. lanthieri isolates. Furthermore, all A. butzleri and A. lanthieri, but only one of the A. cryaerophilus isolates exerted cytotoxic effects. Conclusions: Our study provides evidence for the abundance of putative virulence genes in Arcobacter isolates and prominent cytotoxic effects of A. butzleri and A. lanthieri in vitro. The presence of cdtA, cdtB, cdtC in A. lanthieri points towards CDT secretion as potential mechanism underlying cytotoxicity as opposed to A. butzleri. However, the association of the Arcobacter virulence factors detected and human morbidity should be addressed in future studies.
“…Here, only strain G18RTA carried all 14 virulence genes associated with adherence, invasion, and iron uptake. This is consistent with previous reports, as it is very rare to find all virulence genes in every A. cryaerophilus isolate (Zacharow et al, 2015;Sekhar et al, 2017;Brückner et al, FIGURE 5 | Predicted virulence-associated determinants in 44 A. cryaerophilus genomes including 4 capsule genes, 8 chemotaxis system genes, 31 flagellar genes, 33 type IV secretion system genes, and other virulence determinants genes. 2020).…”
Section: In Silico Virulence Gene Profilingsupporting
Aliarcobacter cryaerophilus (formerly Arcobacter cryaerophilus) is a globally emerging foodborne and zoonotic pathogen. However, little is known about the species' genomic features and diversity, antibiotic resistance and virulence. In this study, 27 A. cryaerophilus strains from water poultry in Thuringia, Germany, were investigated using whole-genome sequencing. Four of these strains were sequenced using longand short-read sequencing methods to obtain circularized genomes. The German strains belong to the A. cryaerophilus cluster I. Cluster I genomes exhibited a high degree of genetic diversity in which variable sites comprised 9.1% of the core genome. The German strains formed three subgroups that contained 2, 6, and 9 strains, respectively. The genomic analysis of cluster I revealed variable presence of mobile elements and that 65% of the strains lack CRISPR systems. The four circularized genomes carried a ∼2 Mbp chromosome and a single megaplasmid (size 98.1-154.5 Kbp). The chromosome was densely packed with coding sequences (∼92%) and showed inversions and shifts in the gene blocks between different strains. Antimicrobial resistance was assessed using a gradient strip diffusion method and showed that all 27 strains were resistant to cefotaxime and susceptible to erythromycin, gentamicin, and ampicillin. Sixteen strains were also resistant to ciprofloxacin, whereas 23 were resistant to streptomycin. The genetic prediction of antibiotic resistance identified numerous efflux pumps similar to those found in A. butzleri. All strains harbored two beta-lactamase genes which may explain the cefotaxime resistance. A correlation between the gyrA point mutation (Thr-85-Ile) and ciprofloxacin resistance was partially discovered in 15 out of 16 strains. In silico virulence profiling showed a wide range of virulence factors including a full chemotaxis system and most of the flagellar genes. In contrast to A. butzleri, no urease cluster was found. This study provides new insights into the genomic variability of A. cryaerophilus strains of cluster I. The different genetic makeup of these strains may contribute to the virulence of strains and the severity of the infections in humans.
“…In a previous study in South Africa, 6.5% of A. butzleri was reported [45]; additionally, percentages of 56.7% from diarrhoeic and 45.5% from non-diarrhoeic specimens were reported in Canada [56]. Virulence genes have been reported in A. butzleri in several studies [57][58][59].…”
Section: Prevalence Of Arcobactermentioning
confidence: 97%
“…The presence of these virulence genes in A. butzleri warranted the international commission of microbiological specification of foods (ICMSF) to categorize A. butzleri as a serious hazard to humans [59,60].…”
Routine diagnostic methods for the aetiologic agents of diarrhoea in most developing countries are usually not sensitive enough, leading to under-diagnosis. Thus, this study investigated possible mixed diarrhoeal aetiology by using cultures and real-time polymerase chain reactions (PCR) in children younger than four years old in the Northwest Province, South Africa. In total, 505 stool samples were collected from symptomatic and asymptomatic children who were attending three clinics and the Brits hospital in Madibeng District, between September 2016 and December 2017. Rotavirus, norovirus, Campylobacter, Arcobacter, and diarrhoeagenic Escherichia coli (DEC) were targeted. Campylobacter spp. (24.6%), Arcobacter (15.8%) and DEC (19.6%) were detected using PCR; only Campylobacter spp. (29.7%) and DEC (26.9%) were detected through the culture. Campylobacter jejuni (36%), Campylobacter coli (28%), Campylobacter upsalensis (12%), and Arcobacter butzleri (15.8%) were the only spp. of Campylobacter and Arcobacter identified. The eaeA gene (31.4%) of enteropathogenic E. coli/enterohaemorrhagic E. coli (EPEC/EHEC) was the most prevalent DEC virulence gene (VG) identified. Rotavirus and norovirus were detected at 23.4% and 20%, respectively. Mixed viral aetiology (7.3%) and the co-infection of A. butzleri and Campylobacter (49%) were recorded. A mixed bacterial-viral aetiology was observed in 0.6% of the specimens. Sensitive diagnostic procedures like PCR should be considered to provide the best treatment to children experiencing diarrhoea.
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