The pathogen Vibrio cholerae uses a large number of coordinated transcriptional regulatory events to transition from its environmental reservoir to the host and establish itself at its preferred colonization site at the host intestinal mucosa. The key regulator in this process is the AraC/XylS family transcription factor, ToxT, which plays critical roles in pathogenesis, including the regulation of two type IV pili, the anticolonization factor mannose-sensitive hemagglutinin and the toxin-coregulated pilus. Previously, it was thought ToxT required dimerization in order to effect transcriptional regulation at its cognate promoters. Here, we present evidence that ToxT directly represses transcription of the msh operon by binding to three promoters within this operon and that dimerization may not be required for transcriptional repression of target promoters by ToxT, suggesting that this regulator uses different mechanisms to modulate the transcriptional repertoire of V. cholerae.Vibrio cholerae is a gram-negative bacterium normally found in aquatic reservoirs. It is also the etiologic agent of cholera, a severe dehydrating diarrhea that affects hundreds of thousands of people each year. Cholera is characterized by voluminous diarrhea caused by the action of the cholera toxin (CT), produced by vibrios colonizing the mucosa of the small intestine. The transitions between the stages of the infectious cycle of this pathogen, between colonization, toxin production, and dissemination back into the aquatic reservoir, is governed by a transcriptional cascade that regulates the production of virulence factors such as CT and the biogenesis of the colonization determinant the toxin-coregulated pilus (TCP). In addition to these provirulence factors, some elements, including the mannose-sensitive hemagglutinin (MSHA) pilus and quorum-sensing systems, which as "anticolonization factors" can have a negative influence on pathogenesis, are downregulated during infection (12,16).The keystone of the transcriptional regulatory system that governs the phenotypic shifts in this transition from aquatic organism to human pathogen is the AraC/XylS family transcription factor ToxT, which is the major regulator of pathogenesis activated in response to entry into the intestine (5, 11). At the end of this cascade are the biogenesis systems for two related but functionally antagonistic type IV pili, the TCP, and MSHA pili. The tight regulation of pili biogenesis is critical for V. cholerae infection, as TCP is necessary for colonization of the host intestinal mucosa (10, 26). The presence of MSHA pili, on the other hand, is actively detrimental to survival in the host, since it binds secretory immunoglobulin A antibodies that, synergistically with the mucin glycocalyx of the intestinal mucosa (17), excludes pathogens such as V. cholerae from the epithelium. We have previously demonstrated that ToxT plays an important part in V. cholerae fitness in infection by resolving the conflicting pressures of these two type IV pili functions by downregul...