Lack of empirical data on the effects of the taungya system on establishment and early growth of softwood plantations have partly contributed to controversial decisions regarding the continued suitability of the system for plantation establishment in Kenya. This study examined effectiveness of taungya systems of forest plantation establishment using Cupressus lusitanica and Pinus patula trees with Zea mays (maize) as a test intercrop on two contrasting site types (deep and shallow soils) in Mt. Elgon forest, western Kenya . Four treatments were evaluated in each site: trees with or without weed control, trees intercropped with maize, and sole maize. Results showed that tree survival, growth and nutrient uptake, and maize growth and yield were higher in the deep soil site than the shallow site. The taungya system improved tree survival and growth, effects being greater in the deep than the shallow soil site. Both Cupressus lusitanica and Pinus patula trees had the same effects on maize growth and yield, reducing maize growth by 41-48% in the deep soil sites, and by 16-26% in the shallow site. Vector nutrient analysis and vector competition analysis of the treatment effects on growth and nutrient uptake of the trees and the maize crop suggested competition for N on the deep soils, but competition for K and P on the shallow soils. The study has demonstrated the applicability of graphical vector competition analysis in diagnosing tree-crop interactions in agroforestry.