even with antiretroviral therapy, children born to HiV-infected (Hi) mothers are at a higher risk of early-life infections and morbidities including dental disease. the increased risk of dental caries in Hi children suggest immune-mediated changes in oral bacterial communities, however, the impact of perinatal HiV exposure on the oral microbiota remains unclear. We hypothesized that the oral microbiota of HI and perinatally HIV-exposed-but-uninfected (HEU) children will significantly differ from HIV-unexposed-and-uninfected (HUU) children. Saliva samples from 286 child-participants in Nigeria, aged ≤ 6 years, were analyzed using 16S rRNA gene sequencing. Perinatal HIV infection was significantly associated with community composition (HI vs. HUU-p = 0.04; HEU vs. HUU-p = 0.11) however, immune status had stronger impacts on bacterial profiles (p < 0.001). We observed agestratified associations of perinatal HIV exposure on community composition, with HEU children differing from HUU children in early life but HEU children becoming more similar to HUU children with age. Our findings suggest that, regardless of age, HIV infection or exposure, low CD4 levels persistently alter the oral microbiota during this critical developmental period. Data also indicates that, while HIV infection clearly shapes the developing infant oral microbiome, the effect of perinatal exposure (without infection) appears transient. With the rapid scale up of life-saving antiretroviral therapy (ART) 1 worldwide, there has been a significant reduction in HIV-related deaths in infants and children 2,3. Although gaps still remain with respect to infant diagnosis, treatment and follow-up, particularly in resource-limited settings such as sub-Saharan Africa 4 , ART has led to a rising population of infants and children who are either perinatally exposed but uninfected (due to improved prevention of mother to child transmission services) or perinatally infected (due to prolonged survival) with HIV. Children born to HIV-infected mothers-perinatally exposed to HIV-particularly those who eventually acquire the infection, are at risk of acquiring diseases associated with a compromised host immune system, including opportunistic infections 5,6. In children and adults, HIV infection (and immunosuppression in general) has been associated with increased inflammatory markers 7,8 and several diseases of the oral cavity, including dental caries 9-15. Most of these infections are poly-microbial in nature and could be a consequence of immune impairment induced by HIV. The increased risk of developing caries associated with HIV could be attributed to increased colonization of cariogenic bacteria due to immunosuppression, and/or a reduction in salivary flow rate. It has also been suggested that the reduction of CD4 + T lymphocytes might lead to the conversion of Candida to a pathogenic state, thereby disrupting the oral microbiota 16,17. With ART, there have been significant and consistent reductions in the prevalence and incidence of oral manifestations of HIV, suc...