Identity of plant variety is essential for crop production system. Two liberica coffee varieties, Lim 1 and Lim 2, have been cultivated in Kepulauan Meranti where peat lands area predominantly found. In addition to their adaptability to peat lands, the two varieties also were reported resistant against Hemileia vastatrix, one of main fungal pathogens in coffee plants. Molecular-based techniques, such as Random Amplified Polymorphic DNA (RAPD) marker, are considered as reliable approaches compared to morphological-based method for identifying plant varieties. This study aimed to analyze RAPD profiles to identify Lim coffee varieties. We sampled Lim 1, Lim 2, and local coffee genotype from Kabupaten Bengkalis and extracted genomic DNA from young leaves and carried out PCR (Polymerase Chain Reaction) using three primers (OPA-04, OPE-03, OPE-18). Results of electrophoresis showed that all three primers produced polymorphic bands. RAPD profiles generated by OPE-03 and OPE-18 could dishtinguish the three different coffee varieties or genotype. In addition, two bands (1,500 and 2,500 bp) amplified by PCR with OPA-04 were specifically observed in Bengkalis coffee, while 650 bp band revealed by PCR with OPE-03 was only present in Lim 1. Based on our result, we suggest that RAPD marker is suitable for identifying liberica coffee varieties and can be used for further investigation to develop liberica varietal specific markers.