Mesoscale and submesoscale processes that contribute to localized increases in nutrients in the sunlit layer can stimulate phytoplankton growth and community changes, but the mechanisms involved remain sparsely documented with in situ data in the case of Eastern Boundary Upwelling Systems (EBUSs) and of most ocean regions. The role of diapycnal mixing in providing nutrients to the upper layer and in influencing phytoplankton size structure was analyzed in an area of intense mesoscale and submesoscale activity during the coastal upwelling season off Concepción (~36-37°S), the Humboldt Current EBUS. Diapycnal nutrient fluxes based on conductivity, temperature, and depth vertical eddy diffusivity (K z) values (the Thorpe scale method) and on nutrient gradients were assessed in association with size-fractionated chlorophyll-a and microdiatom abundance derived from in situ sampling in an area including a mesoscale intrathermocline eddy (ITE) adjacent to a coastal upwelling front (CUF). The indirect estimates of K z values spanned between 0.01 and 4 × 10 −4 m 2 s −1 , and maxima in diapycnal nitrate flux per station ranged between 0.08 and 19.1 mmol m −2 day −1. Maxima in the upward fluxes were detected at the subsurface (15-40 m depth) in the CUF and ITE areas, coinciding with maxima in the micro-and nano-chlorophyll-a fractions and in microdiatom abundance. These results suggest that ITE and CUF features, as well as their interaction, can generate intense diapycnal mixing and, thereby, contribute to increasing nutrient availability below the mixed layer. In turn, these processes enhance the contribution of larger phytoplankton cells in the coastal transition zone of EBUSs. Plain Language Summary Phytoplankton in the upper ocean are the main primary producers of organic matter based on light, inorganic carbon (CO 2), and nutrients. These cells range from small to large sizes in the micrometer scale (~1-100 μm diameter). In coastal upwelling regions, wind-driven events lead to a nutrient enrichment favoring increases of primary production in the coastal zone and to a dominance of large phytoplankton, which require higher nutrient levels than do smaller cells. In contrast, in the oceanic nutrient-poor zone, smaller phytoplankton are usually dominant. However, mesoscale and submesoscale activity (fronts, eddies, meanders, and filaments) in the zone between the coastal and oceanic waters, the coastal transition zone (CTZ), can generate localized injections of nutrients toward the surface and, thereby, contribute to an enhancement of productivity and to changes in the community in the CTZ. Several mechanisms can contribute to such injections, but field observations to document them are sparse. Based on observations in an area of intense mesoscale and submesoscale activity, we provide evidence of the contribution of the turbulent mixing in locally increasing nutrient availability in the upper layer and, in turn, to sustain patches of large-size phytoplankton cells in the CTZ.