Glycerol dialkyl glycerol tetraethers (GDGTs) are core membrane lipids originally thought to be produced mainly by (hyper)thermophilic archaea. Environmental screening of low-temperature environments showed, however, the abundant presence of structurally diverse GDGTs from both bacterial and archaeal sources. In this study, we examined the occurrences and distribution of GDGTs in hot spring environments in Yellowstone National Park with high temperatures (47 to 83°C) and mostly neutral to alkaline pHs. GDGTs with 0 to 4 cyclopentane moieties were dominant in all samples and are likely derived from both (hyper)thermophilic Crenarchaeota and Euryarchaeota. GDGTs with 4 to 8 cyclopentane moieties, likely derived from the crenarchaeotal order Sulfolobales and the euryarchaeotal order Thermoplasmatales, are usually present in much lower abundance, consistent with the relatively high pH values of the hot springs. The relative abundances of cyclopentane-containing GDGTs did not correlate with in situ temperature and pH, suggesting that other environmental and possibly genetic factors play a role as well. Crenarchaeol, a biomarker thought to be specific for nonthermophilic group I Crenarchaeota, was also found in most hot springs, though in relatively low concentrations, i.e., <5% of total GDGTs. Its abundance did not correlate with temperature, as has been reported previously. Instead, the cooccurrence of relatively abundant nonisoprenoid GDGTs thought to be derived from soil bacteria suggests a predominantly allochthonous source for crenarchaeol in these hot spring environments. Finally, the distribution of bacterial branched GDGTs suggests that they may be derived from the geothermally heated soils surrounding the hot springs.Hyperthermophilic archaea thrive at temperatures of Ͼ60°C and are found mostly in waters near volcanic areas. Analysis of cultivated hyperthermophilic archaea showed that their membranes are composed predominantly of isoprenoid glycerol dialkyl glycerol tetraethers (GDGTs) with acyclic or cyclic dibiphytanyl chains (e.g., structures I to V and VIII to XI in Fig. 1; Tables 1 and 2). The structural differences of diacyl membrane lipids from nonthermophilic eukaryotes and bacteria, i.e., ether bonds and the formation of a monolayer rather than a bilayer, have been suggested to contribute to the stability of membranes of hyperthermophiles at high temperatures and low pHs (for examples, see references 11, 34, and 64). Thus, it seemed likely that GDGTs were present mostly in extreme environments such as hot springs or hydrothermal vents. However, analyses of environmental samples from nonthermophilic environments such as oceans, lakes, and soils have revealed that GDGTs are abundantly present and structurally diverse (49) and that they are produced not only by archaea but also by some bacteria (72).Besides GDGTs I to V, which were previously reported to be synthesized by (hyper)thermophilic Crenarchaeota and Euryarchaeota, compound VI is often a dominant GDGT in the oceans, in lakes, and in river wate...