The evolutionarily conserved adaptor protein-3 (AP-3) complex mediates cargo-selective transport to lysosomes and lysosome-related organelles. To identify proteins that function in AP-3-mediated transport, we performed a genome-wide screen in Saccharomyces cerevisiae for defects in the vacuolar maturation of alkaline phosphatase (ALP), a cargo of the AP-3 pathway. Forty-nine gene deletion strains were identified that accumulated precursor ALP, many with established defects in vacuolar protein transport. Maturation of a vacuolar membrane protein delivered via a separate, clathrindependent pathway, was affected in all strains except those with deletions of YCK3, encoding a vacuolar type I casein kinase; SVP26, encoding an endoplasmic reticulum (ER) export receptor for ALP; and AP-3 subunit genes. Subcellular fractionation and fluorescence microscopy revealed ALP transport defects in yck3⌬ cells. Characterization of svp26⌬ cells revealed a role for Svp26p in ER export of only a subset of type II membrane proteins. Finally, ALP maturation kinetics in vac8⌬ and vac17⌬ cells suggests that vacuole inheritance is important for rapid generation of proteolytically active vacuolar compartments in daughter cells. We propose that the cargo-selective nature of the AP-3 pathway in yeast is achieved by AP-3 and Yck3p functioning in concert with machinery shared by other vacuolar transport pathways.
INTRODUCTIONSubcellular compartmentalization by membrane-bounded organelles is a fundamental feature of eukaryotic cells. This organization allows for physical and functional segregation of subcellular processes. An important example of this compartmentalization is the lysosome, which is an acidic organelle that serves as a major site for protein degradation within eukaryotic cells. Degradative enzymes are sequestered within lysosomes ensuring that only material delivered to the organelle is subject to destruction.Compartmentalization of lysosome functions necessitates transport pathways for lysosomal biogenesis, maintenance of function, and transfer of molecules targeted for turnover. Genetic analysis of proteins that are targeted to the lysosome-like vacuole of Saccharomyces cerevisiae has defined six such trafficking routes, each involving vesicle-mediated transport (Bryant and Boyd, 1993). Two of these pathways involve protein transport from the cytoplasm to the vacuole: the cytoplasm to vacuole transport pathway (CVT) and starvation-induced autophagy. A third pathway, the endocytic pathway, delivers cell surface and extracellular molecules to the vacuole. Yet another route provides for vacuole inheritance during cell division. The inheritance pathway directs vesicles derived from the maternal vacuole into the new bud where vesicle fusion seeds formation of a daughter cell vacuole. Finally, there are two vacuolar biosynthetic pathways that originate from the secretory pathway, one clathrin dependent and the other clathrin-independent. Newly synthesized vacuolar components destined for both pathways are transported from the endopl...