To investigate human immunodeficiency virus type 1 (HIV-1) pathogenesis in infected individuals and examine the correlation of HIV-1 expression with extent of clinical and pathologic disease, we studied spinal cords from acquired immunodeficiency syndrome patients with a wide range of spinal cord pathology. By performing in situ hybridization with HIVl--specific riboprobes, we detected HIV-1 RNA in all 10 cords from acquired immunodeficiency syndrome patients with a common, characteristic pathologic entity called vacuolar myelopathy but not in 10 control cords from HIV-1-infected and uninfected patients. In the cords from individuals with vacuolar myelopathy, the level of HIV-1 RNA expression correlated directly with extent of spinal cord pathology and clinical rindings. These data support a role for HIV-1 in the pathogenesis of tissue damage and related clinical disease in infected individuals. (4)(5)(6)(11)(12)(13), with evidence for infection of the astrocyte, oligodendrocyte, endothelial cell, and neuron reported as well (5,6,10). We used in situ hybridization to further investigate HIV-1 pathogenesis in the CNS by studying spinal cords from AIDS patients with a broad range ofcord pathology. We report here that HIV-1 RNA was detected in all 10 cords with a common, characteristic entity called vacuolar myelopathy but not in 10 HIV-1-infected and uninfected control cords. In addition, in the cords with vacuolar myelopathy, the level of HIV-1 RNA expression correlated directly with extent of spinal cord pathology and clinical findings.Spinal cord disease is common following HIV-1 infection and a distinct pathologic process termed vacuolar myelopathy is present at autopsy in -25% of AIDS patients (17). Histologic examination of the spinal cord shows vacuolation of white matter and infiltration by macrophages (17). Severe vacuolar myelopathy is manifested clinically by spastic paraparesis, ataxia, and incontinence, although milder disease is often asymptomatic (17). To investigate the mechanisms of HIV-1 pathogenesis in infected individuals, we examined spinal cords from patients with AIDS. By using combined in situ hybridization-immunohistochemistry to investigate three spinal cords with severe vacuolar myelopathy, we showed previously that abundant HIV-1 RNA was expressed in vacuolated areas of the cord and localized to the macrophage (11). Examination of two of the spinal cords by electron microscopy showed retroviral particles budding from macrophages and also showed that the number of macrophages and viral particles in each cord paralleled the degree of tissue damage (11,12 showed vacuolation and macrophage infiltration that was easily discernible but less extensive than that seen in severe myelopathy; confluent or very large vacuoles were not prominent. Mild vacuolar myelopathy showed minimal white matter vacuolation associated with a small degree of macrophage infiltration. Classification of spinal cords as having severe, moderate, or mild vacuolar myelopathy was performed twice, 6 months apart, w...