Background: Cancer remains a major public health hazard despite the extensive research over the years on cancer diagnostic and treatment , this is mainly due to the complex pathophysiology and genetic makeup of cancer. A new approach toward cancer treatment is the use of cancer vaccine, yet the different molecular bases of cancers reduce the effectiveness of this approach. In this work we aim to use matrix metalloproteinase-9 protein (MMP9) which is essential molecule in the survival and metastasis of all type of cancer as a target for universal cancer vaccine design. Method: reference sequence of matrix metalloproteinase-9 protein was obtained from NCBI databases along with the related sequence, which is then checked for conservation using BioEdit, furthermore the B cell and T cell related peptide were analyzed using IEDB website. The best candidate peptide were then visualized using chimera software. Result: Three Peptides found to be good candidate for interactions with B cells (SLPE, RLYT, and PALPR), while ten peptides found as a good target for interactions with MHC1 (YRYGYTRVA, YGYTRVAEM, YLYRYGYTR, WRFDVKAQM, ALWSAVTPL, LLLQKQLSL, LIADKWPAL, KLFGFCPTR , MYPMYRFTE, FLIADKWPA) with world combined coverage of 94.77% . In addition, ten peptides were also found as a good candidates for interactions with MHC2 (KMLLFSGRRLWRFDV, GRGKMLLFSGRRLWR, RGKMLLFSGRRLWRF, GKMLLFSGRRLWRFD, TFTRVYSRDADIVIQ, AVIDDAFARAFALWS, FARAFALWSAVTPLT, MLLFSGRRLWRFDVK, GNQLYLFKDGKYWRF, NQLYLFKDGKYWRFS), with world combined coverage of 90.67%. CONCLUSION: 23 peptide-based vaccine was designed for use as a universal cancer vaccine which has a high world population coverage for MHC1(94.77%) and MHC2 (90.67%) related alleles.
Introduction:Cancer is a chronic disease with varying degree of manifestations characterized by abnormal cell division and high mortality and morbidity rates, in addition it is considered the second leading cause of death worldwide with an estimated 8 million death annually and 18 million new case per year.(1-5) although cancer survival rate increased dramatically over the years in many countries, yet more work are needed to improve the prognosis of patients suffering from this depilating disease.(6, 7) Cancer can be either common or rare depending on the number of cases. Usually any cancer with a number of cases below 6 in 100000 annually is considered rare type.(8) All types of cancers cause common clinical symptoms including weight-loss, fatigue, pain, nausea, vomiting and constipation, etc.(9)Additional symptoms are specific to the site of malignancy.(10) Breast cancer is the most common site of cancer in women worldwide.(11) Lung cancer is the second most common cancer in both men and women while colorectal is the third most common type cancer in both sexes. (12) The classical management for cancer composed of chemotherapy, radiotherapy and surgery. Recently Immunotherapy started to shows very promising result in field of cancer management. Different type of immunotherapy are available including cytokine therapy, ...