Here we analyzed the multi-timescale variabilities of the biological ocean parameter (chlorophyll concentration, CHL) and the physical ocean factors i.e. sea surface temperature (SST), sea level anomaly (SLA), precipitation and sea surface wind, as well as the biological-physical association relationships over the tropical Pacific Ocean (120°E-70°W, 20°S-20°N) based on the satellite observation datasets and products. In order to obtain the multi-timescale variabilities of the ocean parameters, we use the Hilbert-Huang Transform (HHT) to the time series of the biological and physical ocean satellite datasets. Based on the above datasets and methods, the results show the trends of the biological and physical ocean parameters, as well as the oscillation modes for each parameter and the association relationships between CHL and other physical factors on seasonal, interannual and interdecadal timescales. On seasonal timescale, CHL generally bloomed in boreal spring and vanished in boreal autumn, associating with warm SST and strong northeasterly trade winds in early boreal spring but cool SST and weak northeasterly trade winds in boreal autumn. On interannual timescale, the quasi-biennial oscillation of CHL was not significantly correlated with that of SLA and precipitation, while the ENSO-related oscillation mode of CHL evolved inversely with that of SST, SLA, precipitation and u wind component. And on interdecadal timescale, the 9 years oscillation of CHL was negatively correlated with the interdecadal oscillations of SST, SLA and u wind component.