This paper is all about the construction of a new analytical framework to understand conflict and cooperation both at the international and at the domestic level with the aim of then finding mechanisms to reduce tensions and initiate conflict resolution schemes. The existing research literature on such analytical frameworks has so far been conducted a) mostly on standard social science disciplinary lines and has not incorporated the important work done on these questions by neuro-scientists and behavioral geneticists and b) is not really capable except in very specific instances to deal with the evolving dynamics of conflict and cooperation. Conflict over scarce resources (territory, mates, food) between members of the same species is a universal feature of evolution. Often conflict, especially armed conflict is supposed to be due to shows of force by two or more parties in order to appropriate or dominate resources. Force appears thus not to be the only decisive factor; perceived entitlement and powerful feelings of injustice thereby generated in the case of challenge, extended to group identity are also at the basis of conflict and aggression in humans. The relationship between environment and conflict, the role of emotions such as fear, and the absence of clear definition and enforcement of property rights within societies are also factors in the development of conflict. Thus we have here developed an Article note: The research presented here was supported through a grant from SNIS the Swiss Network for International Studies. This help is gratefully acknowledged by the authors.