<p>Here, we devise and validate a
general method to predict the atomistic structure of the metal-ligand interface
of thiol-stabilized gold nanoparticles Au<sub>x</sub>(SR)<sub>y</sub> by using
information about gold-thiol chemical bonding in a set of reference structures
documented from experiments. Our method is successful in predicting the
observed Au-S interfacial structure for a range of different Au<sub>x</sub>(SR)<sub>y</sub> particles
with (x,y) = (36,24), (38,24), (102,44), (146,57), and (279,84), starting from
the known structure of the gold core. In addition to predicting realistic interface
structures, our method may prove to be useful for investigations on how the
steric effects in the ligand layer affect the metal-ligand interface, as well
as for predicting isomers and intermediate structures during cluster
transformations induced by thermal dynamics or interactions with the
environment. Our method is, in principle, easily modifiable for structural
predictions of a large variety of hybrid nanomaterial systems once a suitable
set of reference structures is available. </p>