Molecular dynamics simulations have been performed with the objective of understanding the phenomenon of nanoparticle aggregation. We have attempted to calculate the free energy associated with the interaction between two 38-atom gold nanocores, with attached passivating thiol chains, in a supercritical ethane solvent and in the vacuum, and without passivating chains in ethane at the critical density and twice the critical density. Our model differs from those used by others in that each gold nanocore is bound by a realistic metal potential that is not formally rigid. In the case of the passivated nanoparticles, we observe profound structural changes in the nanocores, which radically affect the nature of the interaction between them-to the extent that fusion of the two gold nanocores cannot be prevented under the conditions examined. Bare nanocores, on the other hand, do not exhibit much structural change until close contact occurs. The fused nanocores in the passivated and bare nanocore systems have significantly different morphologies. There is evidence that at higher solvent density, the interaction between bare nanocores is slightly repulsive.