Concentrations of 239Pu, 240Pu, and 241Am, and atomic ratio of 240Pu/239Pu in freshly fallen snow on Mt. Zugspitze collected in 2014, 2015 and 2016 were determined by accelerator mass spectrometry (AMS). For the sub-femtogram (10−15 g) - level of Pu and Am analysis, a chemical separation procedure combined with AMS was improved and an excellent overall efficiency of about 10−4 was achieved. The concentration of 239Pu ranges from 75 ± 13 ag/kg to 2823 ± 84 ag/kg, of 240Pu from 20.6 ± 5.2 to 601 ± 21 ag/kg, and of 241Am was found in the range of 16.7 ± 5.0–218.8 ± 8.9 ag/kg. Atomic ratios of 240Pu/239Pu for most samples are comparable to the fallout in middle Europe. One exceptional sample shows a higher Pu concentration. High airborne dust concentration, wind directions, high Cs concentrations and the activity ratio of 239+240Pu/137Cs lead to the conclusion that the sample was influenced by Pu in Saharan dust transported to Mt. Zugspitze.