Two years of longitudinal measurements of human adenovirus group F, norovirus GI and GII, rotavirus, enterovirus, enterovirus D68, hepatitis A virus,Candida auris, and West Nile virus nucleic-acids in wastewater solids: A retrospective study at two wastewater treatment plants

Abstract

Wastewater monitoring for infectious disease targets is increasingly used to better understand circulation of diseases. The present study validated hydrolysis-probe digital droplet (reverse-transcriptase (RT))-PCR assays for important enteric viruses (rotavirus, adenovirus group F, norovirus GI and GII, and enteroviruses), outbreak or emerging viruses (hepatitis A and West Nile virus), and an emerging drug resistant fungal pathogen (Candida auris). We used the assays to retrospectively measure concentrations of the targets in wastewater solids. Viral and fungal nucleic-acid concentrations were measured in two wastewater solids samples per week at two wastewater treatment plants in the San Francisco Bay Area of California, USA for 26 months. We detected all targets in wastewater solids with the exception of West Nile virus. At both wastewater treatment plants, human adenovirus group F was detected at the highest concentrations, followed by norovirus GII, enteroviruses, norovirus GI, and rotavirus at the lowest concentrations. Hepatitis A and C. auris were detected less consistently than the aforementioned viruses. Enterovirus D68 was detected in a limited time frame during fall 2022 at both sites. The measurements reported herein, and in some cases their seasonal trends, are consistent with previous reports of these targets in wastewater. These measurements represent some of the first quantitative measurements of these infectious disease targets in the solid fraction of wastewater. This study lays a foundation for the use of wastewater solids for the detection of specific infectious disease targets in wastewater monitoring programs aimed to better understand the spread of these diseases.

Detection and quantification of human immunodeficiency virus-1 (HIV-1) total nucleic acids in wastewater settled solids from two California communities

“…Each of the 10 replicate nucleic-acid wastewater extracts was used as template undiluted in its own well (10 wells per sample) to measure HIV-1 and PMMoV. The HIV-1 assay was run in multiplex using a probe mixing approach with seven other assays targeting genomes of rotavirus, influenza A subtype markers H1 and N1, SARS-CoV-2, human norovirus GII, human adenovirus group F, and West Nile virus (results not reported herein, but provided elsewhere 32,33 ). Multiplexing method testing showed that presence of seven other nucleic-acid targets in the multiplex reaction did not affect quantification of the HIV-1 target (Figure S1).…”