The elucidation of the complex factors that govern recognition events at the molecular level represents a daunting challenge in our quest to master the art of preâprogrammed molecular assemblies. In this context, we present the molecular architectonics of thoughtfully designed amino acid appended functional molecules 1â5. Naphthalenediimide (NDI) and pyrene were employed as functional modules due to their unusual topological shape similarity as well as complementary Ïâacidic and Ïâbasic character, respectively. In addition, we show that dyads of such unusual functional modules energetically favour alternate assembly in contrast to the predominant selfâsorted assembly observed for singleâcomponent systems. Moreover, by incorporating minute structural mutations into the amino acid sideâchains of 1â5, we successfully tailored their assemblies into wellâdefined supramolecular architectures, namely supercoiled helices, twisted nanoribbons, nanobelts, combâedged nanoflakes and nanosheets. A detailed analysis with the aid of experimental and theoretical studies has generated interesting insights into the factors that govern the recognition events at the molecular level.