Background: Triple-negative breast cancer (TNBC) is a high-risk malignancy due to its high capacity for invasion and lack of targeted therapy. Immunotherapy continues to demonstrate efficacy in a variety of cancers, and thus may be a promising strategy for TNBC given the limited therapeutic options currently available for TNBC. In this study, we performed a comprehensive portrait of immunologic landscape of TNBC based on 2 large-scale breast cancer genomic data.
Methods:We compared expression levels of immune-related genes and gene-sets among TNBC, non-TNBC, and normal tissue, and within TNBCs of different genotypic or phenotypic features. Moreover, we explored the association of immune-related genes or gene-sets expression and survival prognosis in TNBC patients.
Results:We found that almost all analyzed immune-related gene-sets had significantly higher expression levels in TNBC than non-TNBC. These highly expressed gene-sets in TNBC included 15 immune cell type and function, human leukocyte antigen (HLA), cancer testis (CT), tumor-infiltrating lymphocytes (TILs), immune cell infiltrate, regulatory T (Treg) cells, immune checkpoint, cytokine and cytokine receptor, metastasis-promoting, pro-inflammatory and parainflammation (PI) gene-sets. Moreover, TP53-mutated TNBC had significantly higher expression levels of the immune checkpoint, Treg, PI, and CT gene-sets, and lower expression levels of the immune cell infiltrate gene-set than TP53-wildtype TNBC. Furthermore, we found that elevated expression of most of the immune-related genes in TNBC was associated with the ER-status, while some were associated with both ER-and HER2-status. Elevated expression of the immune-related genes in TNBC was also associated with the high tumor mutation burden 3 (TMB) in TNBC. Finally, elevated expression of the immune-related gene-sets was likely to be associated with better survival prognosis in TNBC.
Conclusions:Our findings suggest that TNBC is a breast cancer subtype with particularly strong immunogenicity, and therefore could be propitious to immunotherapeutic options.
BackgroundBreast cancer (BC) is the most common cancer in women [1], of which 15-20% are the triplenegative breast cancer (TNBC) subtype. TNBC is clinically negative for expression of the estrogen receptor (ER) and progesterone receptor (PR), and lacks overexpression of the human epidermal growth factor receptor 2 (HER2) [2]. TNBC has a poor prognosis due to its aggressive clinical characteristics and lack of response to hormonal or HER2 receptor-targeted therapy. Thus far, chemotherapy is the only possible therapeutic strategy in the adjuvant or metastatic setting for TNBC [3]. Some potential targeted therapies for TNBC have been investigated such as targeting VEGF, EGFR, mTOR, PARP1, FGFR, AR, NOTCH, HDAC, CDK, PI3K, MET, and TROP2 [4-7]. However, clinical trial efficacies of most TNBC targeted therapies remain unclear. Recently, cancer immunotherapy has demonstrated high efficacy in treating a variety of cancers including refractory malignancies such as meta...