A time series of survey abundance indices for commercially important demersal fish and cephalopod species, inhabiting the narrow continental shelf of the southern Aegean Sea, is analyzed in relation to the topography of the area in order to evaluate the impact of different spatial fishery bans on the bottom-trawl fishery. With reference to the current situation, results suggested that implementation of the 1967/2006 EC Regulation, which bans bottom-trawl activities within 1.5 NM off the coast, will significantly increase (20-80%, depending on the species) the proportion of the populations that are inaccessible to the bottom-trawl fishery. It might also result in shifting of fishing activities toward deeper waters, adding fishing pressure onto slope resources inhabiting the slope. As depth determines, to a large extent, the distribution pattern of the species, it constitutes a variable of crucial importance for the spatial management of marine fisheries and should be taken into account when adopting relevant management regimes.