In the present treatise, a stability analysis of the bottom boundary layer under solitary waves based on energy bounds and nonmodal theory is performed. The instability mechanism of this flow consists of a competition between streamwise streaks and twodimensional perturbations. For lower Reynolds numbers and early times, streamwise streaks display larger amplification due to their quadratic dependence on the Reynolds number, whereas two-dimensional perturbations become dominant for larger Reynolds numbers and later times in the deceleration region of this flow, as the maximum amplification of two-dimensional perturbations grows exponentially with the Reynolds number. By means of the present findings, we can give some indications on the physical mechanism and on the interpretation of the results by direct numerical simulation in (Vittori & Blondeaux 2008;Ozdemir et al. 2013) and by experiments in (Sumer et al. 2010). In addition, three critical Reynolds numbers can be defined for which the stability properties of the flow change. In particular, it is shown that this boundary layer changes from a monotonically stable to a non-monotonically stable flow at a Reynolds number of Re δ = 18. single stroke of a pulsating flow, such as Stokes' second problem, which is of importance for biomedical applications.Solitary waves, which are either found as surface or internal waves, are of great interest †