24Speciation constrains the flow of genetic information between populations of sexually reproducing 25 organisms. Gaining control over mechanisms of speciation would enable new strategies to manage 26 wild populations of disease vectors, agricultural pests, and invasive species. Additionally, such 27 control would provide safe biocontainment of transgenes and gene drives. Natural speciation can 28 be driven by pre-zygotic barriers that prevent fertilization or by post-zygotic genetic 29 incompatibilities that render the hybrid progeny inviable or sterile. Here we demonstrate a general 30 approach to create engineered genetic incompatibilities (EGIs) in the model insect Drosophila 31 melanogaster. Our system couples a dominant lethal transgene with a recessive resistance allele. 32 EGI strains that are homozygous for both elements are fertile and fecund when they mate with 33 similarly engineered strains, but incompatible with wild-type strains that lack resistant alleles. We 34show that EGI genotypes can be tuned to cause hybrid lethality at different developmental life-35 stages. Further, we demonstrate that multiple orthogonal EGI strains of D. melanogaster can be 36 engineered to be mutually incompatible with wild-type and with each other. Our approach to create 37 EGI organisms is simple, robust, and functional in multiple sexually reproducing organisms. 38 39
Main Text 40In genetics, underdominance occurs when a heterozygous genotype (Aa) is less fit than either 41 homozygous genotype (AA and aa). In 'extreme underdominance', the heterozygote is inviable while 42 each homozygote has equal fitness 1 . Extreme underdominance is an attractive and versatile tool for 43 population control. First, it could be leveraged to create threshold-dependent, spatially-contained 44 gene drives 2 capable of replacing local populations. Such gene drives may be more socially acceptable 45 than threshold-independent gene-drives to suppress populations since their spead can be more tightly 46 controlled. Alternatively, only males could be released for a genetic biocontrol approach that mimics 47 sterile insect technique. Several strategies for engineering underdominance have been described, 48including one-or two-locus toxin-antitoxin systems 3,4 , chromosomal translocations 5 , and RNAi-based 49 negative genetic interactions 6 . Despite its theoretical utility in population control, engineering 50 extreme underdominance has been difficult 1 . 51Extreme underdominance essentially constitutes a speciation event, as it prevents successful 52 reproduction and therefore genetic exchange between two populations. In nature, prezygotic and 53 postzygotic incompatibilities maintain species barriers. Prezygotic incompatibilities prevent 54 fertilization from taking place. These can include geographic separation or behavioral/anatomical 55 differences between individuals in two populations that prevent sperm and egg from meeting. 56Postzygotic incompatibilities occur when genetic or cellular differences between the maternal and 57 paterna...