The MLL gene is a frequent target for leukemia-associated chromosomal translocations that generate dominant-acting chimeric oncoproteins. These invariably contain the amino-terminal 1,400 residues of MLL fused with one of a variety of over 30 distinct nuclear or cytoplasmic partner proteins. Despite the consistent inclusion of the MLL amino-terminal region in leukemia oncoproteins, little is known regarding its molecular contributions to MLL-dependent oncogenesis. Using high-resolution mutagenesis, we identified three MLL domains that are essential for in vitro myeloid transformation via mechanisms that do not compromise subnuclear localization. These include the CXXC/Basic domain and two novel domains of unknown function. Point mutations in the CXXC domain that eliminate myeloid transformation by an MLL fusion protein also abolished recognition and binding of nonmethylated CpG DNA sites in vitro and transactivation in vivo. Our results define a critical role for the CXXC DNA binding domain in MLL-associated oncogenesis, most likely via epigenetic recognition of CpG DNA sites within the regulatory elements of target genes.A distinctive subset of transcriptional regulators exerts its functions via epigenetic modifications of chromatin surrounding the regulatory elements of target genes. These are typified by the trithorax and polycomb groups of chromatin-associated proteins, which function antagonistically as upstream transcriptional regulators of the homeotic genes in Drosophila spp. and mammals (31). The MLL protein (10, 15, 37) is a mammalian orthologue of trithorax and is required for embryonic development via the maintenance but not initiation of expression of target genes such as the Hox genes (2,38,41,42). MLL exists in a multicomponent complex and mediates its epigenetic transcriptional effector functions via a SET domain-dependent histone methyltransferase activity (23,24). MLL specifically methylates lysine 4 (K4) present on the N-terminal tail of histone H3, a modification typically associated with transcriptionally active regions of chromatin (36).The MLL gene is a frequent target for chromosomal translocations associated with aggressive human acute leukemias, generating novel chimeric genes between MLL and 1 of over 30 distinct partner genes (3). These genetic events lead to the production of dominant-acting oncogenic fusion proteins that invariably consist of the N-terminal 1,400 residues of MLL fused to variable portions of the partner protein. The results of structure-function studies of a subset of MLL fusion proteins suggest a common theme whereby transcriptional effector domains of the partner proteins make critical contributions to the oncogenicity of MLL fusion proteins (8,9,18,22,(32)(33)(34)43). The consistent inclusion of the N-terminal 1,400 residues in all described MLL fusion proteins suggests that it contributes critical common functions to leukemogenesis, although the mechanistic basis for such functions remains poorly defined.Similarly, while much progress has been made in defining t...