Ten fragments of higher eucaryotic DNA were tested for upstream activation sequence activity in Saccharomyces cerevisiae by inserting them upstream of a CYCI::lacZ promoter lacking an upstream activation sequence. Fragments containing the 21-base-pair repeat region, the enhancer of simian virus 40 or both strongly stimulated I8-galactosidase synthesis, and three fragments from the polyomavirus enhancer region stimulated moderate levels. Three of the four controls of random DNA sequences failed to stimulate significant levels, and the fourth stimulated moderate levels. The stimulation in all cases was independent of the orientation of the inserted fragment. Two series of clones were examined in which between one and six tandemly arranged copies of a fragment were inserted into the Xhol site of the vector. Very interestingly, we detected an apparent exponential relationship between the number of copies of a fragment and the amount of 0-galactosidase produced. Southern analysis showed that increases in enzyme activity were not a result of increased plasmid copy number. Rather, quantitative S1 nuclease analysis demonstrated that the increases were correlated with steady-state levels of lacZ-specific mRNA. We suggest that there may be an evolutionary relationship between some transcriptional activation sequences in yeast cells and the higher eucaryotic regulatory elements that we tested.The promoter elements that regulate transcription by RNA polymerase II in both yeast cells and higher eucaryotes have been intensively studied. In yeast cells, transcription units (reviewed in reference 79) contain one or more of the following elements: (i) initiator elements, which are located at the RNA initiation site; (ii) TATA regions, which are located about 40 to 120 base pairs (bp) upstream of the specificity start site and govern the rate of RNA initiation; and (iii) upstream activation sequences (UASs), which lie further upstream and activate transcription in response to nutritional or physiological signals (reviewed in reference 34). UASs, when isolated and linked to heterologous genes, are active in both orientations and can function at distances up to 600 bp upstream of the RNA initiation site, but not when placed downstream of it (35,45,78). In three wellcharacterized systems (GAL4 [10,29,30,49,50,66], GCN4 [1,11,14,44,47,80], and HAP1 [67-69]), genetic and biochemical analysis has shown that UASs are DNA-binding sites for transcriptional regulatory proteins.The promoters of the DNA tumor viruses simian virus 40 (SV40) and polyomavirus can serve as prototypes of higher eucaryotic promoters. Each of these viruses contains two major transcription units, for early and late mRNAs, which initiate in a region near the origin of DNA replication and extend in opposite directions around the circular genome (see Fig. 2 for a diagram of the regulatory regions of both viruses).At early times after SV40 infection, the synthesis of the major viral mRNA species is regulated by the early-early promoter, which consists of at least three ...