“…Functional groups, species, or lower rank taxons can be used as biological indicators and assist in the evaluation of conditions inside the aeration tank or the performance of the system itself (dos Santos et al, 2014). There are reports in the literature which describe the relationships between the presence of different microfauna taxons in reactors and the presence of toxic compounds in wastewater, such as chlorine (Salvad´o et al, 2000), salt (Salvad´o et al, 2001), ferric chloride (de Gregorio et al, 2010), ammonium (Klimek et al, 2012;Puigagut et al, 2005), phenol (Papadimitriou et al, 2013), and heavy metals (Nicolau et al, 2005). Other investigations related nitrification efficiency (P´erez-Uz et al, 2010;Poole, 1984), effluent quality (Puigagut et al, 2009;Zhou et al, 2006), organic loading rate (Salvad´o and Gracia, 1993), sludge retention time (Salvad´o, 1994), dissolved oxygen (dos Santos et al, 2014;Esteban et al, 1991), and sludge volume index (Zhou et al, 2006;Zhou et al, 2008) with microfauna involved in the treatment process.…”