Cell division in most prokaryotes is mediated by FtsZ, which polymerizes to create the cytokinetic Z ring. Multiple FtsZ-binding proteins regulate FtsZ polymerization to ensure the proper spatiotemporal formation of the Z ring at the division site. The DNA-binding protein SlmA binds to FtsZ and prevents Z-ring formation through the nucleoid in a process called "nucleoid occlusion" (NO). As do most FtsZ-accessory proteins, SlmA interacts with the conserved C-terminal domain (CTD) that is connected to the FtsZ core by a long, flexible linker. However, SlmA is distinct from other regulatory factors in that it must be DNA-bound to interact with the FtsZ CTD. Few structures of FtsZ regulator-CTD complexes are available, but all reveal the CTD bound as a helix. To deduce the molecular basis for the unique SlmA-DNA-FtsZ CTD regulatory interaction and provide insight into FtsZ-regulator protein complex formation, we determined structures of Escherichia coli, Vibrio cholera, and Klebsiella pneumonia SlmA-DNA-FtsZ CTD ternary complexes. Strikingly, the FtsZ CTD does not interact with SlmA as a helix but binds as an extended conformation in a narrow, surface-exposed pocket formed only in the DNA-bound state of SlmA and located at the junction between the DNA-binding and C-terminal dimer domains. Binding studies are consistent with the structure and underscore key interactions in complex formation. Combined, these data reveal the molecular basis for the SlmA-DNA-FtsZ interaction with implications for SlmA's NO function and underscore the ability of the FtsZ CTD to adopt a wide range of conformations, explaining its ability to bind diverse regulatory proteins.n Escherichia coli cell division is directed by a cytoskeletal element called the "Z ring," which is formed at the cell membrane by the tubulin-like protein, FtsZ (1-5). FtsZ is an ancient and highly conserved protein that mediates cell division in most bacteria, many archaea, chloroplasts, and the mitochondria of primitive eukaryotes (5). FtsZ consists of three main domains: a globular core that harbors the GTP-binding site, a flexible C-terminal linker (CTL) that is ∼50 residues long in E. coli but is of variable length among FtsZ homologs, and a C-terminal domain (CTD) comprised of a highly conserved set of residues followed by a short and less conserved, variable (CTV) region (Fig. S1A) (6-9). FtsZ self-assembles into linear protofilaments in a GTP-dependent manner by interactions between its globular domains, and data suggest that loosely arranged lateral contacts between protofilaments mediate the formation of the Z ring at the cell center (10-16). Notably, the intracellular levels of FtsZ remain largely unchanged during the cell cycle and exceed the critical concentration required for Z-ring formation (17). A diverse repertoire of FtsZ-binding regulatory proteins has evolved that affect FtsZ localization and polymerization to ensure that the Z ring is created at the correct place and time during cell division (2)(3)(4)(18)(19)(20). In the model bacteria E. coli a...