Recent achievements in our laboratory toward the “bottom‐up” fabrication of addressable multicomponent molecular entities obtained by self‐assembly of C60 and porphyrins on Ag(100) and Ag(111) surfaces are described. Scanning tunneling microscopy (STM) studies on ad‐layers constituting monomeric and triply linked porphyrin modules showed that the molecules self‐organize into ordered supramolecular assemblies, the ordering of which is controlled by the porphyrin chemical structure, the metal substrate, and the surface coverage. Specifically, the successful preparation of unprecedented two‐dimensional porphyrin‐based assemblies featuring regular pores on Ag(111) surfaces has been achieved. Subsequent co‐deposition of C60 molecules on top of the porphyrin monolayers results in selective self‐organization into ordered molecular hybrid bilayers, the organization of which is driven by both fullerene coverage and porphyrin structure. In all‐ordered fullerene–porphyrin assemblies, the C60 guests organize, unusually, into long chains and/or two‐dimensional arrays. Furthermore, sublimation of C60 on top of the porous porphyrin network reveals the selective long‐range inclusion of the fullerene guests within the hosting cavities. The observed mode of the C60 self‐assembly originates from a delicate equilibrium between substrate–molecule and molecule–molecule interactions involving charge‐transfer processes and conformational reorganizations as a consequence of the structural adaptation of the fullerene–porphyrin bilayer.