A wide variety of temperate animals rely on length of day (photoperiodism) to anticipate and prepare for changing seasons by regulating the timing of development, reproduction, dormancy, and migration. Although the molecular basis of circadian rhythms regulating daily activities is well defined, the molecular basis for the photoperiodic regulation of seasonal activities is largely unknown. We use geographic variation in the photoperiodic control of diapause in the pitcher-plant mosquito Wyeomyia smithii to create the first QTL map of photoperiodism in any animal. For critical photoperiod (CPP), we detect QTL that are unique, a QTL that is sex linked, QTL that overlap with QTL for stage of diapause (SOD), and a QTL that interacts epistatically with the circadian rhythm gene, timeless. Results presented here confirm earlier studies concluding that CPP is under directional selection over the climatic gradient of North America and that the evolution of CPP is genetically correlated with SOD. Despite epistasis between timeless and a QTL for CPP, timeless is not located within any detectable QTL, indicating that it plays an ancillary role in the evolution of photoperiodism in W. smithii. Finally, we highlight one region of the genome that includes loci contributing to CPP, SOD, and hormonal regulation of development.T HE annual change in day length at temperate latitudes provides a highly reliable indicator of future seasonal events and a wide variety of organisms use day length (photoperiod) to time their development, reproduction, dormancy, and migration. Concordance between individual photoperiodic response and local climate is an essential component of fitness for animals living in the temperate zone (Bradshaw et al. 2004), and modification of photoperiodic response is an important adaptation of animals during range expansion (Danilevskii 1965;Cooke 1977;Tauber et al. 1986;Danks 1987;Lounibos et al. 2003) or when confronted with rapid climate change (Bradshaw and Holzapfel 2001a, 2006). Photoperiodism provides an ecologically relevant, highly heritable trait whose adaptive significance in a temperate seasonal environment is not questioned. Length of the favorable or growing season in North America decreases with increasing latitude (Bradshaw 1976). Consequently, the optimal time to enter diapause advances to an earlier day in the year and the day length used to switch from active development to diapause [hereafter, the critical photoperiod (CPP)] is positively correlated with latitude and altitude among a wide variety of temperate arthropods (Danilevskii 1965;Taylor and Spalding 1986;Danks 1987). The consistent genetic change in photoperiodic response over geographic and climatic gradients provides one of the most robust examples of repeated adaptive evolution in nature.Although much progress has been made in identifying the genetic components of the circadian clock regulating daily activities, the molecular basis of the photoperiodic timer regulating seasonal activities is conspicuously absent from the ...