Thyroid hormone receptor (TR) functions as part of multiprotein complexes that also include retinoid X receptor (RXR) and transcriptional coregulators. We have found that both the TR CoR box and ninth heptad are required for RXR interaction and in turn for interaction with corepressor proteins N-CoR and SMRT. Remarkably, the recruitment of RXR to repression-defective CoR box and ninth-heptad mutants via a heterologous dimerization interface restores both corepressor interaction and repression. The addition of thyroid hormone obviates the CoR box requirement for RXR interaction, provided that the AF2 activation helix at the C terminus of TR is intact. These results indicate that RXR differentially recognizes the unliganded and liganded conformations of TR and that these differences appear to play a major role in the recruitment of corepressors to TR-RXR heterodimers.Thyroid hormone receptor (TR) is a multifunctional protein. It is a transcriptional repressor in the absence of ligand and a transcriptional activator in the presence of thyroid hormone (T3). Repression is mediated by interaction with a family of corepressor proteins, including N-CoR and SMRT (10,17,34,45). A ligand-induced conformational change causes dissociation of the corepressor and recruitment of a transcriptional coactivator to the DNA-bound TR. TR binds DNA most effectively as a heterodimer with retinoid X receptor (RXR) (6,19,22,23,25,44,47). Although RXR itself is a retinoid receptor (24), its main function in TR action does not appear to require retinoid binding (14). The TR-RXR interaction is stable in solution in both the presence and absence of ligand, and it has previously been suggested that the primary role of RXR is to increase the affinity and specificity of TR for T3 response elements, which often consist of two TR half-sites separated by 4 bp (39).The primary region of importance for the TR-RXR interaction in solution is the region which is generally known as the ninth heptad, corresponding to helices 10 and 11 of the crystal structure of the TR ligand binding domain (LBD) (40). The importance of this domain explains why C-terminal deletions of TR and the C-terminal variant TR␣2 do not interact with RXR in solution (31, 42). Interestingly, although the interaction between TR and RXR is ligand independent, two groups have previously described TR ninth-heptad point mutants which interact with RXR only in the presence of T3 (1, 28). Although the TR LBD structure has been solved only in the presence of ligand, a comparison with the unliganded RXR suggests that one of the effects of ligand binding is conformational change in the region between helices 10 and 11 in addition to the turning back of the amphipathic AF2 helix (helix 12) towards the core of the TR (5, 40).In contrast to the importance of C-terminal domains for RXR interaction, previous studies of TR interaction with NCoR and SMRT have focused on the CoR box within the hinge region of TR (10, 17). Like the ninth heptad, the CoR box is highly conserved among receptors that int...