Environmental impactThis paper aims at identifying environmental water body characteristics within a major tributary backwater of the Three Gorges Reservoir in China, particularly with respect to its pronounced typical seasonality. This reservoir is highly threatened by eutrophication problems and is unique in terms of its low mean water residence time and 30 m annual water level uctuation scheme. We applied state-of-the art in situ and online multi-sensor monitoring techniques and identied the large water level uctuation as a main driver of pollutant transport into the TGR tributary backwaters. These are extremely vulnerable to algal blooms. An adapted dam management strategy, based on a feedback with the current main stream pollution state, is proposed to reduce pollutant input into tributary backwaters.